Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20030 201 / 9e-61 RING/U-box superfamily protein (.1) AT4G28890 196 / 4e-58 RING/U-box superfamily protein (.1) AT5G05810 127 / 5e-33 ATL43 RING/U-box superfamily protein (.1) AT5G46650 98 / 5e-23 RING/U-box superfamily protein (.1) AT4G15975 97 / 6e-23 RING/U-box superfamily protein (.1) AT3G16720 97 / 2e-22 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G09100 92 / 2e-22 RING/U-box superfamily protein (.1) AT4G33565 95 / 2e-21 RING/U-box superfamily protein (.1) AT1G23980 95 / 2e-21 RING/U-box superfamily protein (.1) AT5G17600 94 / 5e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011702 [exp] 663 / 0 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10012975 [exp] 203 / 4e-61 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 159 / 2e-44 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10023617 [exp] 120 / 2e-30 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10031515 [exp] 96 / 8e-22 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 94 / 4e-21 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10037490 [exp] 94 / 7e-21 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10036466 [exp] 94 / 8e-21 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 94 / 9e-21 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042501 [exp] 294 / 2e-96 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 270 / 4e-87 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 254 / 8e-81 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 126 / 4e-32 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 97 / 1e-22 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 97 / 5e-22 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.009G073900 [exp] 93 / 1e-21 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.006G176700 [exp] 96 / 2e-21 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 95 / 2e-21 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 95 / 2e-21 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10009511 pacid=23147323 polypeptide=Lus10009511 locus=Lus10009511.g ID=Lus10009511.BGIv1.0 annot-version=v1.0 ATGCATATGAAACCAGCTGATGCTTTCCTAATCTCCATGATCCTCTGGTCATTGATCCTCAAAGCCAAAGGCCAAGTCACAAAGCTCACAACAGCAACAG AATCCAGCAGCAAGTCATCATCACCAAAGCCAACCCTTGCTGTAATCATAATCATCCTCTCAACCATGTTCTCCCTCACATTCCTCCTACTTTGCTACTC TAAATTCTGCCACACCTCTTCTGATCAACCCACCAACAACGACCCTGATCAGAACCTTCCGGTTACTACTAGAACACCCAGGTCCAGGTTCTCAGGGATT GACCCTCAACTCATCAAATCTCTTCCCTTTTTCAACTTCTCTCGCCTCAGAGGCTCGAAACAGGGCCTCGAATGCGCGGTGTGCATTTCGAAATTCCAAG ATTCGGATGTCCTACGATTGCTTCCCAGCTGCAAGCACGCTTTCCACATGGAATGCATCGACCAGTGGCTCAACTCTCACTCCAGCTGCCCACTCTGCCG CCACAAGTACGATCCTTCCGACCCGGACAACTTTGCTTACTCCAACAGCTTGCGCTACTTAAGAAGCCCTTCCAATCTTAGCCGAGACGACCACTCGTCG TCCACAGTTGAGGTCTTTGTCCAAAGAGAGCAGCAGCAAGATGGAGGAGAAGATTGTGATTTTGTTTCTTCTGATCATCATAAAGCTACGGAACAATTGT TGTTGTTCCACAAGTTGAACCACAGGGTTATTCTTTCTGAGGTTGCGGTGAAGAATAGATGGAGCGAGGTTAACTCTTCAGACATGCTGTCTCTGAATTC CGAGATGCTGAGAGTGGTTTCGGGTGGTAGATTCTGCTCAGCTGCCTCTTCTACTACGCAGCGACTGAATATGGAGAAGGTCAAGGAAGATATGGGGAAG AAGAGGGTTTATGAGTCTAAATTGACTAGTTGTGGAGTTGAAACAAGTAGAGATCATTCCTCGATTAATATTGGGAATGGCGGCGGTAGCTCTGTTCATG AGAATGTGAGGTCCATGTCAGAGATTGCAAACTTGTCGAGATTCAAAGAAAACCAGAAAGATAAAATTGGGGAGAGGGAAGATGAGAGAACCAGAAGGCT ATGGTTACCTATTGCAAGGCGTACGGTACAATGGTTTGCTGCTGGTCGACAAGGAGAGTTGCAGGGTTTGCAGTACCAACCAGAAGCATTCAGCTTGTGA
AA sequence Show only first row Show all	>Lus10009511 pacid=23147323 polypeptide=Lus10009511 locus=Lus10009511.g ID=Lus10009511.BGIv1.0 annot-version=v1.0 MHMKPADAFLISMILWSLILKAKGQVTKLTTATESSSKSSSPKPTLAVIIIILSTMFSLTFLLLCYSKFCHTSSDQPTNNDPDQNLPVTTRTPRSRFSGI DPQLIKSLPFFNFSRLRGSKQGLECAVCISKFQDSDVLRLLPSCKHAFHMECIDQWLNSHSSCPLCRHKYDPSDPDNFAYSNSLRYLRSPSNLSRDDHSS STVEVFVQREQQQDGGEDCDFVSSDHHKATEQLLLFHKLNHRVILSEVAVKNRWSEVNSSDMLSLNSEMLRVVSGGRFCSAASSTTQRLNMEKVKEDMGK KRVYESKLTSCGVETSRDHSSINIGNGGGSSVHENVRSMSEIANLSRFKENQKDKIGEREDERTRRLWLPIARRTVQWFAAGRQGELQGLQYQPEAFSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20030			RING/U-box superfamily protein...		Lus10009511 [exp]	0	1
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10005635 [exp]	3.6	0.8952
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10021227 [exp]	4.7	0.9141
AT5G19970			unknown protein		Lus10019451 [exp]	5.9	0.9155
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	11.9	0.9107
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	12.0	0.9067
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10026252 [exp]	12.8	0.8714
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	17.0	0.8872
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10008100 [exp]	18.8	0.8932
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	20.0	0.8965
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10007906 [exp]	20.8	0.9014

Compare expression of checked genes

Lus10009511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.