Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 219 / 4e-64 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT1G78390 183 / 4e-50 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 177 / 3e-48 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 170 / 1e-45 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 166 / 3e-44 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G19170 160 / 2e-42 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G24220 157 / 2e-41 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT2G44990 49 / 6e-06 MAX3, CCD7, ATCCD7 carotenoid cleavage dioxygenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042829 [exp] 620 / 0 AT3G63520 207 / 2e-59 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 210 / 2e-60 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 212 / 6e-60 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 198 / 3e-54 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 171 / 7e-46 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 164 / 1e-43 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 139 / 4e-35 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10011750 [exp] 132 / 9e-33 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10037874 [exp] 104 / 4e-26 AT3G63520 54 / 4e-09 carotenoid cleavage dioxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239402 [exp] 813 / 0 AT3G63520 208 / 1e-59 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043500 [exp] 774 / 0 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239300 [exp] 768 / 0 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043000 [exp] 765 / 0 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.018G042650 [exp] 668 / 0 AT3G63520 198 / 3e-56 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239200 [exp] 611 / 0 AT3G63520 135 / 3e-34 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 216 / 8e-63 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 214 / 2e-62 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265400 [exp] 207 / 1e-59 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 201 / 3e-57 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10009513 pacid=23147318 polypeptide=Lus10009513 locus=Lus10009513.g ID=Lus10009513.BGIv1.0 annot-version=v1.0 ATGCGAATCGATGTTCCGGTAAAGAATATGATGAAGAAGGCTTCTGGGCAGCTGTTGGATGCTTTTGTAGATTCCACCTTCAAGTTTGTTGATCAGCCGT TGCTCCCTTCTCAGAGTAACTTTGCGCCGGTAGATGAACTGAAGGAATCCGTTCGAATTTCTAACATTGAGGGTCATATTCCTCGTGATTTCCCCCAGGG CGTCTACATTAGAAATGGGCCAAATCCTCTGTTTGGAGGATTAAAATCAACGGAATCAGTGTTTGGAAGGTCAAGCCACATTTGGGTAGAAGGAGAAGGA ATGCTCCATGTCTTGTACTTGCAAAAGGGCAGTGATGGTGAATGGGATGATGTATTGTACAACAACAGGCATTTGGAGCCTGAAACCTTCAAAATGGAGA AGCACAGAAACAAGCCCTCTTTTCTCCCCGCCGTTGAAGGCCATTCCCCTGCTGTTCTTACTGCCTACTTGCTCAACTGGATGAGATTTGGAAAAGTGAA CAAATATATCAGCAACACAAACGTAATCGAGCATGGTGGAAAGTTCTACGCAACGGCTGAGAATCATGCTGCTCAACAGTTCGACATACTGTCACTGGAT ACCATAGGTGACTGGGACATCCATGGAGCTTGGACTCGACCTTTCACTAGCCACCCAAAGAAAGATCCAACCACTGGTGAGCTTGTCATAATCGGGGTGC AGGCTTCTAAGCCTTTCATGGAACTGGGAGTGATTTCTGCTGACGGGGAGCAATTACTTCATAAAGTGGATCTCAACCTCGATCGCTGTTCTCTTTCTCA TGATATCGGGATAACCAAGAGGTATAATGTGATCTTAGATTTTCCACTTACCATCGACATTGACAGACTCATCAAGGGAGGACCGTTGTTAAAATACGAG AAAAAAGACTACGCAAGGATTGGAGTGATGCCTCGATATGGAGATGCAGATTCGATTCGGTGGTTCGATGTGTTACCCAATTGCACATTTCACATCCTCA ATTGTTTCGAGCAGGATGATGAGGTAGTGGTATGGGGATGTAGGTCACTTGATTCAATAATTCCGGGACCAGATATGGGCGAGAACAAATTTGAGTGGTT TTCGACGAGGTTTAATAAGAGTGCAGAATCCAATCACGACGATGAATCGTTGTTCAGTCGGTTGTACGAATGGAGATTAAACATGCAAACTGGTGAGGTT AAGGAAAGGAATCTAACTGGAACTGAAGCCTCCATGGATTTCCCTATGATACATCCACAATTCACGGGCCTCAAAAACAATTTTGGGTATACACAAATTA TTGATCTTGAAGCTAGCTCCTCTTCAGGGATGGCAAAATATGGAGGTCTGGCAAAACTCTACTTTCAAGACCCTCAATCAAATGGTAACATGAAGAAATT TTTGGTTGGAGAACAGAGAGAAAACACCAAATGTGAAGATGAGATAAAAGTGGAGTACCATAAACTTGAAGAAAACACATTCTGCTCAGGAGCTGCATTC GTGGCCGGAGGAGGTTGTGAAGAAGATGATGGTTGGATCGTTACTTTCATACACAATGAAGTTACTGACATATCCTATGTTTATATAATTGACACGAAGA AGTTCAGTAGTGAGCCAGTTGCCAAGATCACATTACCTTGTAGAGTACCATATGGTTTTCATGGAGCGTTCATGCCAATGCCAATCTCCCTCTAA
AA sequence Show only first row Show all	>Lus10009513 pacid=23147318 polypeptide=Lus10009513 locus=Lus10009513.g ID=Lus10009513.BGIv1.0 annot-version=v1.0 MRIDVPVKNMMKKASGQLLDAFVDSTFKFVDQPLLPSQSNFAPVDELKESVRISNIEGHIPRDFPQGVYIRNGPNPLFGGLKSTESVFGRSSHIWVEGEG MLHVLYLQKGSDGEWDDVLYNNRHLEPETFKMEKHRNKPSFLPAVEGHSPAVLTAYLLNWMRFGKVNKYISNTNVIEHGGKFYATAENHAAQQFDILSLD TIGDWDIHGAWTRPFTSHPKKDPTTGELVIIGVQASKPFMELGVISADGEQLLHKVDLNLDRCSLSHDIGITKRYNVILDFPLTIDIDRLIKGGPLLKYE KKDYARIGVMPRYGDADSIRWFDVLPNCTFHILNCFEQDDEVVVWGCRSLDSIIPGPDMGENKFEWFSTRFNKSAESNHDDESLFSRLYEWRLNMQTGEV KERNLTGTEASMDFPMIHPQFTGLKNNFGYTQIIDLEASSSSGMAKYGGLAKLYFQDPQSNGNMKKFLVGEQRENTKCEDEIKVEYHKLEENTFCSGAAF VAGGGCEEDDGWIVTFIHNEVTDISYVYIIDTKKFSSEPVAKITLPCRVPYGFHGAFMPMPISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	4.2	0.9197
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	4.5	0.8935
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	5.2	0.8982
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	5.7	0.9010
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	6.6	0.8578
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	6.9	0.8953
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	7.7	0.8862
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	16.7	0.8762
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10030664 [exp]	19.2	0.8167
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	19.8	0.8720

Compare expression of checked genes

Lus10009513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.