Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010883 [exp] 62 / 7e-12 ND / Lus10001304 [exp] 60 / 1e-08 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10000293 [exp] 53 / 1e-08 ND 48 / 2e-05 Lus10036312 [exp] 0 / 1 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009514 pacid=23147315 polypeptide=Lus10009514 locus=Lus10009514.g ID=Lus10009514.BGIv1.0 annot-version=v1.0 ATGGTGATGCGTTATCAATCTTCTATTTCTTTCTTAGGACAACAACGGCGGCTAAGTAACCTCAATCTCCGCAACCTGTATCTCCTTCATTATCCAAGGA TGACCAACCCTTCTCCAAAGTTTTCTTACAAAACGGTCGCTTTCTACCTCCCACGCAAGCCAGCTGCCTTTGCCAGATCCTTCTGCTGTCGGATCTCCAG TTACCCAGCCTTTACTCCACCACCGCAGGAACAAGTTCTCGAGCATGCACGTTCCATCATGCAGGATGGCTCTGACTATATGAAAAAATCAACAGCTATT TTGAGATTGCATCTTCCTTTGGCAAAAGTTAAACTGGAAAAACTCCAAGCATCTTCTGTTACCGTTCCTATTACTCCCCAACCAGTGCTTGGCGATGGGA TGCATCCACAACTTGGTCAAGGGATGCGCAGCCAGACCAGAAAACGACTTTTCGACAAGTGA
AA sequence Show only first row Show all	>Lus10009514 pacid=23147315 polypeptide=Lus10009514 locus=Lus10009514.g ID=Lus10009514.BGIv1.0 annot-version=v1.0 MVMRYQSSISFLGQQRRLSNLNLRNLYLLHYPRMTNPSPKFSYKTVAFYLPRKPAAFARSFCCRISSYPAFTPPPQEQVLEHARSIMQDGSDYMKKSTAI LRLHLPLAKVKLEKLQASSVTVPITPQPVLGDGMHPQLGQGMRSQTRKRLFDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009514 [exp]	0	1
					Lus10009515 [exp]	1.0	0.9445
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10038735 [exp]	2.4	0.9248
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	9.0	0.9141
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	10.5	0.8911
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	12.7	0.8781
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	13.7	0.8931
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	15.3	0.8626
AT1G59077			unknown protein		Lus10022089 [exp]	16.7	0.8555
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	17.2	0.8777
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10037975 [exp]	17.7	0.8606

Compare expression of checked genes

Lus10009514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.