Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008178 [exp] 82 / 2e-18 ND / Lus10036312 [exp] 74 / 2e-15 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001304 [exp] 66 / 2e-12 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10000293 [exp] 52 / 5e-08 ND 48 / 2e-05 Lus10042671 [exp] 46 / 5e-06 ND 41 / 0.001 Lus10020633 [exp] 44 / 4e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009515 pacid=23147310 polypeptide=Lus10009515 locus=Lus10009515.g ID=Lus10009515.BGIv1.0 annot-version=v1.0 ATGGCGATGGCCCCTATTTTTTGCACGATTTTAGTCCCAATAATCTTGCCGTCAAACTCCAGTTGCGGCTGGTTAACACATAGGATATTGGCGATCCCTC AAGACCTGCTAACGTCTACGGCTTTGGCACCCATTGGGTCGATGCCCAGGACTCTTACTTTTCTTTTCTGCGCTTCCTCTATTTCTGATTTACTCCGTCT TCATCATGTAGACATCGTCGGTAAAGTTGTGGCAGGTGGTGAACCGGATCATTACCAGCGGGGTTCATCTATTACTCAACTCCAGAAATTAACCATTGCT AATGAAAGATTAGTTATTCCCCGTCAAATGCTGGTTCCTCAGGTCGCTACTCTTGTGGTCACCCCATCAAGCCCTTCAAGTACTCATACCACACCTATGC CAGGTGACCCCGAATATGTTGCTCCTGTGCCAACTTACACTCCCTCGCCGACATCACCATCCCATACCTCTCAGGAACTTCCGTTGCATTACTGTTCCCT TATTCTCCTCTGTCAATTGGCATCTCTGATTTGTGCTTTTGTAAAATGTGTTCCCAACTGA
AA sequence Show only first row Show all	>Lus10009515 pacid=23147310 polypeptide=Lus10009515 locus=Lus10009515.g ID=Lus10009515.BGIv1.0 annot-version=v1.0 MAMAPIFCTILVPIILPSNSSCGWLTHRILAIPQDLLTSTALAPIGSMPRTLTFLFCASSISDLLRLHHVDIVGKVVAGGEPDHYQRGSSITQLQKLTIA NERLVIPRQMLVPQVATLVVTPSSPSSTHTTPMPGDPEYVAPVPTYTPSPTSPSHTSQELPLHYCSLILLCQLASLICAFVKCVPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10009515 [exp]	0	1
					Lus10009514 [exp]	1.0	0.9445
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	1.4	0.9169
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	2.4	0.8894
AT4G10970			unknown protein		Lus10032393 [exp]	6.5	0.8496
AT1G01770			unknown protein		Lus10036349 [exp]	7.3	0.8383
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	8.1	0.8351
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009829 [exp]	11.0	0.8219
					Lus10043270 [exp]	14.7	0.8346
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10019126 [exp]	15.5	0.8260
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	18.8	0.8605

Compare expression of checked genes

Lus10009515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.