Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22430 97 / 1e-24 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 94 / 1e-23 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G24760 93 / 2e-23 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT4G22110 89 / 8e-22 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G43940 88 / 1e-21 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 88 / 2e-21 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G77120 82 / 2e-19 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT1G64710 82 / 3e-19 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G42250 79 / 2e-18 Zinc-binding alcohol dehydrogenase family protein (.1) AT2G21730 58 / 8e-11 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005656 [exp] 251 / 3e-86 AT1G22430 155 / 4e-45 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10042787 [exp] 87 / 3e-21 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 87 / 4e-21 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 87 / 5e-21 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 87 / 5e-21 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 87 / 8e-21 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10033241 [exp] 82 / 3e-19 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Lus10023572 [exp] 79 / 5e-18 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10040457 [exp] 78 / 1e-17 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142700 [exp] 110 / 5e-30 AT1G22430 295 / 3e-97 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142750 [exp] 110 / 8e-30 AT1G22430 299 / 4e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 97 / 7e-25 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041600 [exp] 96 / 2e-24 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G254900 [exp] 89 / 1e-21 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G072100 [exp] 86 / 7e-21 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.014G193800 [exp] 86 / 1e-20 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.007G108500 [exp] 86 / 1e-20 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 86 / 2e-20 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.004G067000 [exp] 86 / 2e-20 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10009516 pacid=23145708 polypeptide=Lus10009516 locus=Lus10009516.g ID=Lus10009516.BGIv1.0 annot-version=v1.0 ATGGCGTCTGTCAGCTTTGCTCGCCCTGACAAGAATGGAGTTATCACTTGCAAGGCAATAGTGCTTAAGGAGGCGAAGAAGCCAGGGATGTCATATGCTG ATACCGTCGAGATAAAAGACATCCAAGTCGACCCGCCGCAAAATGTCGAGCTTAGGGTTATGATGCTATGTGCTAGTGTGTGCCGCACCGATATTTTAAC CATTGAAGGCTTCATGGCTCCGACTCAATTCCCTAAAGTCAATGGGCATGAAGGTGTTGGGATAATCGAGAGCATGGGCCCGGACACGAAGAACTTCAAA GTGGGTGACGTCATCGTGGCTCCGACATTAGGAGAGTGCCAGACCTGCAGCAGCTGCAGGTCCGGCCGAACCAACTTCTGCCAGAACTAA
AA sequence Show only first row Show all	>Lus10009516 pacid=23145708 polypeptide=Lus10009516 locus=Lus10009516.g ID=Lus10009516.BGIv1.0 annot-version=v1.0 MASVSFARPDKNGVITCKAIVLKEAKKPGMSYADTVEIKDIQVDPPQNVELRVMMLCASVCRTDILTIEGFMAPTQFPKVNGHEGVGIIESMGPDTKNFK VGDVIVAPTLGECQTCSSCRSGRTNFCQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	0	1
AT1G04670			unknown protein		Lus10004041 [exp]	2.2	1.0000
					Lus10027066 [exp]	2.4	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	2.4	1.0000
					Lus10007508 [exp]	5.0	1.0000
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	5.2	0.9983
					Lus10006918 [exp]	5.7	1.0000
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	5.9	1.0000
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	6.9	1.0000
					Lus10040397 [exp]	8.0	1.0000
AT3G14880			unknown protein		Lus10039196 [exp]	8.1	0.9925

Compare expression of checked genes

Lus10009516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.