Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22440 89 / 2e-20 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 88 / 6e-20 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22430 88 / 6e-20 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 84 / 1e-18 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G42250 81 / 2e-17 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G63620 78 / 3e-16 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2) AT5G24760 76 / 7e-16 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G77120 69 / 2e-13 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 69 / 2e-13 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G64710 67 / 1e-12 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005655 [exp] 275 / 9e-95 ND 37 / 0.005 Lus10005656 [exp] 124 / 2e-34 AT1G22430 155 / 4e-45 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000624 [exp] 80 / 5e-17 AT1G22440 514 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004785 [exp] 80 / 7e-17 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10040457 [exp] 79 / 2e-16 AT5G42250 488 / 7e-173 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10004786 [exp] 78 / 2e-16 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10033241 [exp] 77 / 7e-16 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Lus10023572 [exp] 76 / 2e-15 AT5G42250 439 / 1e-152 Zinc-binding alcohol dehydrogenase family protein (.1) Lus10031890 [exp] 75 / 3e-15 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041600 [exp] 135 / 2e-37 AT1G22430 300 / 3e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.019G041500 [exp] 134 / 3e-37 AT1G22430 308 / 1e-102 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142700 [exp] 122 / 1e-32 AT1G22430 295 / 3e-97 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.018G142750 [exp] 122 / 1e-32 AT1G22430 299 / 4e-99 GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.002G013400 [exp] 86 / 5e-19 AT5G42250 521 / 0.0 Zinc-binding alcohol dehydrogenase family protein (.1) Potri.011G152900 [exp] 84 / 2e-18 AT1G32780 545 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.011G152800 [exp] 80 / 5e-17 AT1G32780 540 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1) Potri.014G193800 [exp] 71 / 7e-14 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.004G067000 [exp] 69 / 3e-13 AT5G24760 616 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Potri.002G254900 [exp] 68 / 5e-13 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10009517 pacid=23145686 polypeptide=Lus10009517 locus=Lus10009517.g ID=Lus10009517.BGIv1.0 annot-version=v1.0 ATGGTGGTCGACTCCAACTACGCCACCAAGCTGAACGAGATCGCACCGGAGCTCCCTCCGCCGCATGGCAGCATCCTCTCGTGTGCTTTCGCCACTGGAT ACGGTGCCGTTTGGCTCGACGCCGCCGTCAAGGAAGGTGACTCCGTTGCCGTTTTTGGAGTCGGCTCCGTCGGCATGTCTGCTGTAATTGCTGCCAAAGA ACTGAAAGCGAAGCAGATAATAGTCGTAGACAGGAACGAGTACAAGCTGAAAATGGCCATGGAATTAGGGGCCACCCACTCCATCAACTCCGAGAAACTA CCCGAGGGGGTCACCGTTTCGGAGGCGGTCAGGTTCCTCACCGCCAACGGAGTCGGAGTCGATGCCAGCATCGAATCCTCCGGCTACGACGTCTTCATGA ACGAAGCCATGAAAGCCGCCATCAAGGGCAAAGCCAAGACCGTGATAACCGGAGAAGGAATTTACGAAAATGACCGAATCTTCTTCGATTTCAAGGACTT CCTGTTCGGCGGGAACGTCGTCGGGAATGTCACGGGTCGGGTTAGAATCCATAGCGATTTCCCCGGGTTGCTGAGAAAGGCTCAAGAACCGGTAATCAGA GCTGGAATGGATAAAATCTTGGGGTACAATGTCATTACGAGGAAGTGCAAGTATGAGGTTGATATTCGTGAGGGTACTCCTGCATTACTGAAAGCACTGG AAGATGTGGAGAATGAGGATTGTGTCAAACTCGTGATCAAGTTGAACGATTTACTGATATCGTAA
AA sequence Show only first row Show all	>Lus10009517 pacid=23145686 polypeptide=Lus10009517 locus=Lus10009517.g ID=Lus10009517.BGIv1.0 annot-version=v1.0 MVVDSNYATKLNEIAPELPPPHGSILSCAFATGYGAVWLDAAVKEGDSVAVFGVGSVGMSAVIAAKELKAKQIIVVDRNEYKLKMAMELGATHSINSEKL PEGVTVSEAVRFLTANGVGVDASIESSGYDVFMNEAMKAAIKGKAKTVITGEGIYENDRIFFDFKDFLFGGNVVGNVTGRVRIHSDFPGLLRKAQEPVIR AGMDKILGYNVITRKCKYEVDIREGTPALLKALEDVENEDCVKLVIKLNDLLIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	0	1
AT1G04670			unknown protein		Lus10004041 [exp]	3.7	0.9914
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	4.0	0.9750
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	4.9	0.9548
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	5.3	0.9486
					Lus10007508 [exp]	5.3	0.9914
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	6.5	0.9914
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	7.3	0.9488
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	7.5	0.9914
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	8.4	0.9157
					Lus10006918 [exp]	8.4	0.9914

Compare expression of checked genes

Lus10009517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.