Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08700 498 / 3e-175 PS1 Presenilin-1 (.1) AT2G29900 307 / 4e-101 PS2 Presenilin-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020339 [exp] 673 / 0 AT1G08700 531 / 0.0 Presenilin-1 (.1) Lus10031966 [exp] 312 / 4e-103 AT2G29900 471 / 3e-166 Presenilin-2 (.1) Lus10035137 [exp] 279 / 2e-91 AT2G29900 410 / 1e-143 Presenilin-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067700 [exp] 557 / 0 AT1G08700 494 / 1e-173 Presenilin-1 (.1) Potri.015G058301 [exp] 330 / 1e-109 AT2G29900 431 / 1e-149 Presenilin-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF01080 [flax] [poplar] Presenilin Presenilin
Representative CDS sequence Show only first row Show all	>Lus10009518 pacid=23145700 polypeptide=Lus10009518 locus=Lus10009518.g ID=Lus10009518.BGIv1.0 annot-version=v1.0 ATGGAGTCCAGCATATTGGAGTCGATCGGAGTGGAGATCATCGGAGTGATGTCCCCGGTCTCCATCTGCATGTTCCTCGTAGTCCTGATCGTCTACACCC TTTCGCCGGCCGACCCTCTCTCGGGCCCCGCCTCTCCGCCCCTACGCACCGCCGCCAACCTCGTCTACCTCGAGTCGTCCTCCGACTCCACCGCTCAGAA GCTCGAAGGATCCTTGCTCAACGCGCTCGTCTTCGTCCTTATCCTCGCCTTCGTCACTTTCCTCCTCCTCCTCCTCTACTACTACGACTGCACCTGCTTC CTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTCCTCGGAAGCATGGGAGGATCAATTTTTCTATCGATAATCCAGCATTTCTCGATACCAGTAGATT CAATCACCTGCTTTCTTTTGCTGTTCAACTTCACAGTATTAGGTACATTGTCAGTTTTCTCAGTCGGGATACCGATTTTCCTGAGGCAAGCGTACATGGT TTCGATGGGGATATTCGTGGCAGCTTGGTTTACGAAGTTGCCCGAATGGACTACTTGGGCTCTACTAGTGGTATTAGCACTCTACGACGTGATTGCAGTT CTAGCACCCGGTGGACCACTTAAATTGCTGGTCGAGTTGTCTCAAAGCAGGGGCGAAGAGCTACCGGCATTGATTTATGAAGCAAGACCGACTGTTTCAC CCGATATGAGAAGTAGTGGGCGGAGCTTGGAGCTTCTGTTTGGCATGGCTTTCGAATCGGGATCAGTGGAGATGCAGCGTGTTGGGTCAGGTAGTCTCGA AATGGGATCCACACATTCAAGCATTGTGGAAACTTTACAAGATAGAGATGAAGTTGAGAGGTCTCCTTTGGTGGGGAGTCGTTACGAAGGGAGGCAATCT TCAAGCACCGGATCAGAATACTCAGTAGTTGTCGGTACTAGTAATTGTGGCTCTTCTTCCGAGGCTGTTGCGGACGAAGAGAGGTCCCCTCTTGTGAGCG GTCAGAGTAGGATGGAGGACAATGATGATGATTCAGACTCCGGTTTTTCGAGTAGAGGCATTAAATTGGGTCTAGGAGACTTCATTTTCTACAGTGTCCT TGTTGGCAGGGCTGCGATGTACGATCTGATGACGGTGTACGCGTGCTACCTGGCTATAATCTCGGGACTTGGCTGCACCCTGATTCTGCTCGCAGTCTGC GGTAAAGCTCTTCCGGCTCTCCCAATCTCGATAGCATTGGGTGTCGTGTTCTACTTCTTGACGCGGCTGTTAATGGAGCCATTTATCGTCGGGACTTCGA CGAATCTGTTGATGTTCTGA
AA sequence Show only first row Show all	>Lus10009518 pacid=23145700 polypeptide=Lus10009518 locus=Lus10009518.g ID=Lus10009518.BGIv1.0 annot-version=v1.0 MESSILESIGVEIIGVMSPVSICMFLVVLIVYTLSPADPLSGPASPPLRTAANLVYLESSSDSTAQKLEGSLLNALVFVLILAFVTFLLLLLYYYDCTCF LKNYMRFSAFFVLGSMGGSIFLSIIQHFSIPVDSITCFLLLFNFTVLGTLSVFSVGIPIFLRQAYMVSMGIFVAAWFTKLPEWTTWALLVVLALYDVIAV LAPGGPLKLLVELSQSRGEELPALIYEARPTVSPDMRSSGRSLELLFGMAFESGSVEMQRVGSGSLEMGSTHSSIVETLQDRDEVERSPLVGSRYEGRQS SSTGSEYSVVVGTSNCGSSSEAVADEERSPLVSGQSRMEDNDDDSDSGFSSRGIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLAVC GKALPALPISIALGVVFYFLTRLLMEPFIVGTSTNLLMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	0	1
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	3.2	0.8892
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	5.2	0.8630
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	6.0	0.8715
AT4G17060		FIP2	FRIGIDA interacting protein 2 ...		Lus10001004 [exp]	9.4	0.8403
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	10.7	0.8532
AT1G08700		PS1	Presenilin-1 (.1)		Lus10020339 [exp]	11.8	0.8493
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	12.2	0.7764
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10019007 [exp]	12.5	0.8012
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	13.0	0.8431
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	13.7	0.8425

Compare expression of checked genes

Lus10009518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.