Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08710 220 / 2e-70 F-box family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020340 [exp] 353 / 2e-122 AT1G08710 233 / 2e-76 F-box family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067600 [exp] 232 / 1e-75 AT1G08710 230 / 1e-75 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009519 pacid=23145749 polypeptide=Lus10009519 locus=Lus10009519.g ID=Lus10009519.BGIv1.0 annot-version=v1.0 ATGGCAGCTGCTTTACCAGACGAACTATGGCGGCAGATCCTGGAAACCGGTGCACGAAACTCCACCCTCACTTACAAGGACTTATGCTGCCTTGCCATCT CCTGCAGCCGCCTCCACCGATTGTCCGGCGACGACTCAATCTGGTCCGTCGTCTTCGCTTCCGATTTCCCTGCGCAAAAATCTAGCTCATCATCCGCAAA ATCAACCTACAGAATCAGTTTTGAGAAGGAGAGGGATAGGAAGATGGCGGCTCACAGGAGGGCGGTGCTTAGGAAGGAAAGCCAAGTTATTGAGCGTCGA AGAAGGTTAAGGGATATCGAGGATCGGTTATGTCGCGAGAGCGAGAAATTGAGAGGAGCTGCAATGGAGTTGTCCAATTTGCTTACGGTCAGGCAAGCTT CAGTGGCGTTGAATGTATGGCAGCCACAAGCAGTGAAGGGAAGACAAAAGCAAGTAGTGGAGCAGTGTTCTGTTCCTGTTGAATCTCGGCTTCATTCTCT TGAAATGGAGATGAAGCTCTGCAAGCAGCAGATTTCAGGGTTTAAAAAGACCTACAGAGACGAGAAACTCAGGCTTGAAGCGGCAGAAAAGGAGCTGGAA TCAATGAAATATCACCCTTTGCAAGATGTCAACTGCTTAGCTGGCGTTCAAGAAGGAAGTAAAGTTATCCCCAAGAGGAAGAGGTCGAAGAGATCCATGG AATTTCTTGACACAATGTGCAGGTCCCGATGGCAGAGCGGAGTATCATGCGAAGAACCCTACCAAAATTCGGTGTCTAGGATCCTGTGGCTCCCGCGTTA CCTAACGAATGCATCGACTACCCCAATGAAACTTCTCGTTGATTACGAATCAGAAGGCGGGCTACGTTGGATGACGATAGTTAAGATCACGACAGGTGAT TCTTCAGTACTGAAGCACAAAACTCGGGGCCGGTCCATGCGTATTGTACTTGTAGCTCTTCATTAA
AA sequence Show only first row Show all	>Lus10009519 pacid=23145749 polypeptide=Lus10009519 locus=Lus10009519.g ID=Lus10009519.BGIv1.0 annot-version=v1.0 MAAALPDELWRQILETGARNSTLTYKDLCCLAISCSRLHRLSGDDSIWSVVFASDFPAQKSSSSSAKSTYRISFEKERDRKMAAHRRAVLRKESQVIERR RRLRDIEDRLCRESEKLRGAAMELSNLLTVRQASVALNVWQPQAVKGRQKQVVEQCSVPVESRLHSLEMEMKLCKQQISGFKKTYRDEKLRLEAAEKELE SMKYHPLQDVNCLAGVQEGSKVIPKRKRSKRSMEFLDTMCRSRWQSGVSCEEPYQNSVSRILWLPRYLTNASTTPMKLLVDYESEGGLRWMTIVKITTGD SSVLKHKTRGRSMRIVLVALH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08710			F-box family protein (.1.2)		Lus10009519 [exp]	0	1
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	4.0	0.9319
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	6.3	0.9086
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	9.5	0.8993
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	13.6	0.9106
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	14.5	0.8847
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	19.4	0.9093
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	21.6	0.9031
AT3G51500			unknown protein		Lus10014816 [exp]	21.9	0.8690
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	26.6	0.9033
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10025690 [exp]	29.4	0.8859

Compare expression of checked genes

Lus10009519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.