Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32180 1422 / 0 ATPANK2 pantothenate kinase 2 (.1.2.3) AT1G60440 411 / 2e-135 ATCOAA, ATPANK1 pantothenate kinase 1 (.1) AT4G35360 204 / 5e-58 Uncharacterised conserved protein (UCP030210) (.1) AT2G17320 199 / 2e-56 Uncharacterised conserved protein (UCP030210) (.1) AT2G17340 197 / 1e-55 Uncharacterised conserved protein (UCP030210) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020341 [exp] 1501 / 0 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10013019 [exp] 462 / 1e-154 AT4G32180 503 / 3e-173 pantothenate kinase 2 (.1.2.3) Lus10029146 [exp] 461 / 3e-154 AT4G32180 500 / 7e-172 pantothenate kinase 2 (.1.2.3) Lus10013846 [exp] 185 / 3e-51 AT4G35360 619 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Lus10026563 [exp] 168 / 4e-45 AT4G35360 555 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077300 [exp] 1520 / 0 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.012G081600 [exp] 1512 / 0 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.010G041800 [exp] 497 / 1e-168 AT4G32180 516 / 2e-178 pantothenate kinase 2 (.1.2.3) Potri.008G189500 [exp] 481 / 2e-162 AT4G32180 504 / 7e-174 pantothenate kinase 2 (.1.2.3) Potri.004G207700 [exp] 189 / 5e-53 AT4G35360 580 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.009G169000 [exp] 186 / 6e-52 AT4G35360 595 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01937 [flax] [poplar] DUF89 Protein of unknown function DUF89 CL0108 [flax] [poplar] Actin_ATPase PF03630 [flax] [poplar] Fumble Fumble
Representative CDS sequence Show only first row Show all	>Lus10009520 pacid=23145714 polypeptide=Lus10009520 locus=Lus10009520.g ID=Lus10009520.BGIv1.0 annot-version=v1.0 ATGGCTGGATTTAAGGAGGATGGCCGCCCAGTTCTTCTTGGAAGTAACGACGCTGCAACATTATTCAAAGAAGCGTCAAAATCTGGTGTTGAAACTGTCA GTAGTAGCAGCAGGCAGCTGGAAAAGGCGGCTAGAGAGGAAGGTCAAGGAGGTGGGAGAGGAGGAGAAATGGCTGGGGGTGGGAGCTCGATTCACCGGTC CGGTTCGAGGCCCCAGCTCGACCTTAGCAAGGCTGCAATCCAGGGGAATTTCGAGGAGAAAGATCCCACCATCCTGCTGCCTAACCAGTCTGATGACATT TCCCATTTGGCTCTTGATATCGGAGGATCTCTGATTAAACTTGTGTATTTCTCTAGACACGAAGACCGATCGAGTAACTACAGGAGAGCAATGACACTCC AGGAGAAACTAGGGATTTCGAATGGTAGTCGGAGGAGCTTTCCTGTTCTTGGTGGAAGGCTGCACTTCGTGAAGTTTGAGACGACCAAGATTAATGAGTG CCTGGAGTTTATCTCTTCCAAACAGCTTCACTGCTGTGGAGTAGATGCAGGTAGTGAGCTTCCTGGAACTGCAGCTAACAGAAATGCTGTGATCAAGGCT ACAGGCGGTGGGGCATATAAGTTTGCTGATCTCTTCAAGGAAAGACTCGGGGTTAGCCTTGACAAGGAAGATGAAATGGACTGTCTTGTGGCAGGAGCAA ATTTTTTGCTCAAGGCGATTCGTCATGAAGCTTTCACCCACATGGAGGGTCAGAAAGAGTTTGTGCAGATCGATGATAATGATCTATTCCCTTATCTTTT AGTGAACATCGGTTCTGGAGTTAGCATGATCAAGGTTGATGGAGATGGGAAGTTTGAGCGTGTCAGCGGGACAAATGTCGGTGGCGGTACATATTGGGGG TTGGGGAAGCTGTTGACCAAGTGCAAGAGCTTTGATGAGTTGCTGGAGCTGAGCCAAAGAGGAGATAATAGCACCATCGATATGCTTGTTGGTGACATTT ATGGTGGTACCGATTACAATAAGATTGGTCTCTCGGCATCAACCATTGCGTCTAGTTTCGGTAAGGCCATTTCTGACAAGAAGGAACTTGAAGACTACAG GCCTGAAGATATTTCTCTGTCTCTTCTACGGATGATTTCTTACAATATTGGGCAGATTTCATATTTAAATGCACTTCGATTTGGACTTAAGCGCATCTTT TTCGGTGGTTTCTTTATAAGAGGTCATGCTTATACCATGGACACGATATCTTTTGCTGTTCAGTTCTGGTCCAAAGGAGAGATGCAAGCTATGTTTCTGC GACACGAAGGGTTTCTTGGAGCTTTGGGGGCGTTTATGAGCTACGAGAAGCACGGTCTAGACGACTTAATGGTTCATCAGTTGGTTGAAAGATTCCCCAT GGGAGCACCATATACAGGTGGAAAGATTCATGGACCGCCACTCGGTGATTTGAATGAGAAGGCAAGTGCACTTGAAATTTCTTGGATGGAGAAGTTTGTG CTGAAAGGAACAGAGATTATTGCACCTGTGCCAATGTCTCCCGGAGGAACTACTGGGCTTGGTGGCTTTGAGGTCCCTTCCTCTAAAGGAGGTACACTGC GATCCGATGCGAGTGCACTCAACGTTGGGGTTCTCCATCTCGTTCCGACTTTGGAGGTGTTTCCCCTGTTAGCAGACTTGAAAACGTATGAGCCCAACAC CATTGACCTCTCTGATCACAATGAGTTGGAGTACTGGTTCACCGTTCTGTCTGAGCATATGCCCGATCTCGTCGATAAGGCAGTAGCAAGTGAGGGAGGA ACTGACGACGCAAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCTCACTTGGCAAGATTGATGGAGGAGCCCGCTGCATATGGGAAGTTAGGGC TGGCCAATCTTTTGGAGCTCAGAGAAGAGTGTCTGAGAGAGTTTCAGTTCGTCGATGTCTATAGAAGCATTAAACAGAGGGAAAATGAGGCCTCGCTTGC TGTGCTACCTGACCTATTAATGGAGCTTGATAGTATGACGGAGGAGACACGGTTGCTTACCTTAATAGAGGGAGTTCTAGCTGCTAACATATTCGACTGG GGATCTCGTGCCTGTGTGGATCTCTACCATAAAGGAACAATCATTGAGATCTACAGAATGAGCCGCAACAAAATGCAGCGTCCTTGGCGGGTGGATGATT TTGATCTTTTCAAAGAGAGAATGTTGGGTTCTGGAGATAAGAAACCTCTTCCACACAAGAGAGCTTTGCTTTTTGTGGACAACTCAGGCGCTGACATTGT TCTTGGAATGCTTCCTTTGGCAAGGGAACTCCTTCGCCGTGGAACCGAGGTTGTTTTGGTTGCAAATTCTCTTCCTGCTCTGAATGATGTAACTGCCATG GAGGTTCCTGACATTGTTGCTGAGGCTGCAAAGAAAGCTGATGTGTTTCCTACTACTAACTCTATACAGCACTGTGACATTCTTCGGAGAGCTGCCGAAG CAGGAGGGCTACTAGTGGACGCAATGATCAACAGCTCCGACGGATCGAAAGAGAACTCGCCATCGGTACCGTTAATGGTAGTCGAGAACGGGTGTGGAAG CCCCTGCATTGACTTGAGGCAGGTCAGCTCCGAGCTTGCCGCCGTTGCAAAGGAGGCTGATCTGGTTATCTTGGAAGGAATGGGTAGATCTCTTCACACC AATTTCAACGCTCGGTTTCGATGCGATGCATTGAAGCTTGCAATGGTGAAGAATCAAAGGTTGGCGGAGAAGTTGATCGAAGGAAACATATACGACTGTG TCTGCAGATACGAACCAGAAGCAAAACTCAGTTATTAG
AA sequence Show only first row Show all	>Lus10009520 pacid=23145714 polypeptide=Lus10009520 locus=Lus10009520.g ID=Lus10009520.BGIv1.0 annot-version=v1.0 MAGFKEDGRPVLLGSNDAATLFKEASKSGVETVSSSSRQLEKAAREEGQGGGRGGEMAGGGSSIHRSGSRPQLDLSKAAIQGNFEEKDPTILLPNQSDDI SHLALDIGGSLIKLVYFSRHEDRSSNYRRAMTLQEKLGISNGSRRSFPVLGGRLHFVKFETTKINECLEFISSKQLHCCGVDAGSELPGTAANRNAVIKA TGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDDNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWG LGKLLTKCKSFDELLELSQRGDNSTIDMLVGDIYGGTDYNKIGLSASTIASSFGKAISDKKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIF FGGFFIRGHAYTMDTISFAVQFWSKGEMQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKASALEISWMEKFV LKGTEIIAPVPMSPGGTTGLGGFEVPSSKGGTLRSDASALNVGVLHLVPTLEVFPLLADLKTYEPNTIDLSDHNELEYWFTVLSEHMPDLVDKAVASEGG TDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLANLLELREECLREFQFVDVYRSIKQRENEASLAVLPDLLMELDSMTEETRLLTLIEGVLAANIFDW GSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDLFKERMLGSGDKKPLPHKRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAM EVPDIVAEAAKKADVFPTTNSIQHCDILRRAAEAGGLLVDAMINSSDGSKENSPSVPLMVVENGCGSPCIDLRQVSSELAAVAKEADLVILEGMGRSLHT NFNARFRCDALKLAMVKNQRLAEKLIEGNIYDCVCRYEPEAKLSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10009520 [exp]	0	1
AT3G07140			GPI transamidase component Gpi...		Lus10038183 [exp]	2.2	0.8051
AT2G14520			CBS domain-containing protein ...		Lus10020494 [exp]	9.4	0.7401
AT3G18670			Ankyrin repeat family protein ...		Lus10035567 [exp]	12.4	0.8320
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	15.7	0.8222
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	22.5	0.8163
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	24.5	0.8095
AT3G01720			unknown protein		Lus10014878 [exp]	24.7	0.7055
AT1G02270			Calcium-binding endonuclease/e...		Lus10010095 [exp]	32.2	0.7082
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10016860 [exp]	33.3	0.7964
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	38.2	0.8012

Compare expression of checked genes

Lus10009520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.