Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03630 427 / 4e-148 CS26 cysteine synthase 26 (.1) AT3G59760 364 / 4e-123 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT2G43750 357 / 5e-121 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT4G14880 343 / 1e-116 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT3G22460 340 / 1e-115 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G04940 318 / 2e-106 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 300 / 9e-100 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 294 / 3e-97 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G61440 293 / 4e-96 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT1G55880 108 / 1e-25 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020342 [exp] 596 / 0 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10027056 [exp] 360 / 5e-122 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 358 / 4e-121 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10015947 [exp] 344 / 1e-116 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 342 / 6e-116 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 334 / 6e-113 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10014765 [exp] 298 / 8e-98 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10036370 [exp] 257 / 1e-82 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10004118 [exp] 255 / 3e-82 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G045800 [exp] 434 / 8e-151 AT3G03630 441 / 5e-154 cysteine synthase 26 (.1) Potri.013G127800 [exp] 369 / 2e-125 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.008G153300 [exp] 349 / 8e-119 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 343 / 3e-116 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 338 / 1e-114 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 333 / 1e-112 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 326 / 7e-110 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.005G048132 [exp] 325 / 2e-109 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.013G035200 [exp] 323 / 8e-109 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 301 / 3e-100 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10009521 pacid=23145718 polypeptide=Lus10009521 locus=Lus10009521.g ID=Lus10009521.BGIv1.0 annot-version=v1.0 ATGGCGCTTTCTTCAGCTTCTTCTCCTTCTCTCCTTCTCCCACCTTCCCTTTCCGCTTCTCCACCACGTAAATGGGTTTTTTCATTCCCCACGAACTCCT CCGTCTTCGCTTCTCCGCCGCTCTATCTCGCTTCGAAACGTCACGGTTCGATCACGGCTGCCCGTGCTTCTAAAACCAAGTCTCCGTTGATGCAAGCCTC ACCTCCCGCGAAAGACAAGGAAAAAAAAGAAGATGGAGGCGGAGGAGGTAGCATAACCGCCGGAGACGAAGAGCTGGATTATGTAGACATCGCAGATGAC GTCACGCAGTTGATCGGGTGTACGCCGATGATATACCTTAACAAAGTGACCAAGGACTGTATGGCCAACGTAGCTGCAAAGCTTGAATCCATGGAGCCTT GCAGAAGTGTCAAGGATAGAATTGGTTATAGTATGATTTGTGAAGCGGAGGAAAATGGAAGGATTTCTCCGGGAAAGAGCATTCTTGTCGAACCAACAAC TGGGAATACTGGACTGGGTATTGCATTTGTTGCTGCAGCTAAGGGATATAAAGTTATAGTCACCATGCCCGCATCGCTTGATCTTGAGAGGAGGGTTCTT TTGCGAGCTTTTGGAGCAGAAATTGTTCTGACGAATCCGGAAAAGGGTCTGAAAGGTGCTGTTGATAAAGCTGAAGAAATTGCTAAAAGAACACCTAATG CATACATGTTTCGACAGTTTGACAACTCAGCTAATGTGAAGATACACTACGAAACAACAGGACCAGAGATATGGGAGGATACTTTGGGCAACGTTGACAT ATTTGTTGCTGGAATTGGAACAGGGGGTACTGTTACAGGAGCTGGTCGTTTCTTGAAAATGATGAACACAAATATTAAGGTAGTCGGTGTAGAGCCTGCC GAGAGGAGTGTAGTCTCAGGGCAACACAGAGGTTACATCCCCAGTATCCTGGATATCAAGTTGCTAGATGAGGTTATCAAGATCACGAACGACGAAGCGA TTGAGATGGCGAGGAGATTGGCATTGGAAGAAGGCTTGCTGGTTGGGATATCATCAGGAGCTGCCGCTGCTGCAGCAATTACTTTAGGAAAAAGGCCCGA GAATGTTGGGAAACTTATAACACTTTGGGGAGAGATACATTTCTACAGCTCTTTTCCGCTCAACGTTGGACGAAGTACAAAACATGCAGCCATCATAGCC GCGAAACACTGCCAGACAACTCCCCTTGTTCAAAACTTCTCCGGTTTCCTTCCGATTTTGAAACGTCCAGGGTACATCTCCCCTTAA
AA sequence Show only first row Show all	>Lus10009521 pacid=23145718 polypeptide=Lus10009521 locus=Lus10009521.g ID=Lus10009521.BGIv1.0 annot-version=v1.0 MALSSASSPSLLLPPSLSASPPRKWVFSFPTNSSVFASPPLYLASKRHGSITAARASKTKSPLMQASPPAKDKEKKEDGGGGGSITAGDEELDYVDIADD VTQLIGCTPMIYLNKVTKDCMANVAAKLESMEPCRSVKDRIGYSMICEAEENGRISPGKSILVEPTTGNTGLGIAFVAAAKGYKVIVTMPASLDLERRVL LRAFGAEIVLTNPEKGLKGAVDKAEEIAKRTPNAYMFRQFDNSANVKIHYETTGPEIWEDTLGNVDIFVAGIGTGGTVTGAGRFLKMMNTNIKVVGVEPA ERSVVSGQHRGYIPSILDIKLLDEVIKITNDEAIEMARRLALEEGLLVGISSGAAAAAAITLGKRPENVGKLITLWGEIHFYSSFPLNVGRSTKHAAIIA AKHCQTTPLVQNFSGFLPILKRPGYISP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	1.7	0.9606
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	2.0	0.9624
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	2.0	0.9610
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	2.4	0.9574
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	4.0	0.9594
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	4.5	0.9583
AT5G01590			unknown protein		Lus10012500 [exp]	4.5	0.9465
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	6.2	0.9425
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	6.7	0.9526
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003578 [exp]	7.0	0.9551

Compare expression of checked genes

Lus10009521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.