Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03610 429 / 3e-152 ELMO/CED-12 family protein (.1) AT1G03620 271 / 2e-90 ELMO/CED-12 family protein (.1) AT3G60260 270 / 2e-90 ELMO/CED-12 family protein (.1.2.3.4) AT2G44770 263 / 1e-87 ELMO/CED-12 family protein (.1) AT1G67400 258 / 2e-85 ELMO/CED-12 family protein (.1) AT3G43400 170 / 5e-52 ELMO/CED-12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020344 [exp] 615 / 0 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1) Lus10024285 [exp] 263 / 2e-87 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10039805 [exp] 259 / 1e-86 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10018574 [exp] 258 / 2e-85 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10037017 [exp] 257 / 5e-85 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10015790 [exp] 254 / 7e-84 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10003841 [exp] 229 / 2e-72 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069000 [exp] 408 / 3e-144 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1) Potri.014G049800 [exp] 266 / 1e-88 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.002G138700 [exp] 265 / 3e-88 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.010G060700 [exp] 256 / 6e-85 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.008G175301 [exp] 248 / 1e-81 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.013G136200 [exp] 247 / 3e-80 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10009523 pacid=23145684 polypeptide=Lus10009523 locus=Lus10009523.g ID=Lus10009523.BGIv1.0 annot-version=v1.0 ATGTCAACGACCTTGAGAAGAAGGCTTCATCATGGGGATATCGACGGAAGAAGGAACGAGCATTACGATGATTCCGGGTTGGATGAGCCTTTACTCGAGC CTTATGATCGACAAATCGAACAAAAAGGGATGTTTGCTGGAGATGTTTGGAATGTTGATAGGACGCTGGAGCAGATTCATATCCACTGGACATTCCTGTT TACAACTGTCATTGCCCAGTGGGCTCAATTGCTAGCGAATATTGTCGTTGGTTCAAGATCTTTTATAGAGCGGTTCTTACCTGCTGCATCGGTTCCTGCT GGAGCCAGTACAAATCTTCGTCTGCCTTGTCTCAGCGCTTTGCAGGAGGAAAGACTTGTCAATTTGCAGCGGCGACTTGGAGTTCCATTTGATGGTTCAC TCTTGGAGCATCAAGACGCACTTAAACAACTGTGGAGGTTGGCTTATCCTGATAGGCAGCTCCCAGCACTTAAATCAGAGCTTTGGAAAGAGATGGGTTG GCAAGGTTGCGATCCTTCAACAGATTTCCGGGGTGGAGGATACATTTCGCTGGAGAACCTTATTTACTTCGCAACGACATATCCGAACTCGTTCCAGAGA CTGCTACACAAAAAAGACGGTAAAAGAGCCGAATGGGAGTACCCCTTTGCAGTAGCTGGGATACACATTTCTTTCACTCTGGCACAAATGCTGGATCTTC AAAAGGGGAAGCCCAAAACACAAGCTGGAATCCGGTTCGTCGAAATGCTGGAGCGCGACGAGATGGCGTTCGACAAACTCTACTGCGTCGCATTCCAGAT GATGGACGCTCAGTGGCTCGCGAAGCGTGCTTCGTATATGGAATTCAATGATGTAATGAAGTCTACAAGGAGCCAGTTGGAAAGGGAGCTTGTGCTTGAA GATATCCGCTCTGTGAAGGATCTGCCTGCTTACAATTTGCTTTCAGGATAA
AA sequence Show only first row Show all	>Lus10009523 pacid=23145684 polypeptide=Lus10009523 locus=Lus10009523.g ID=Lus10009523.BGIv1.0 annot-version=v1.0 MSTTLRRRLHHGDIDGRRNEHYDDSGLDEPLLEPYDRQIEQKGMFAGDVWNVDRTLEQIHIHWTFLFTTVIAQWAQLLANIVVGSRSFIERFLPAASVPA GASTNLRLPCLSALQEERLVNLQRRLGVPFDGSLLEHQDALKQLWRLAYPDRQLPALKSELWKEMGWQGCDPSTDFRGGGYISLENLIYFATTYPNSFQR LLHKKDGKRAEWEYPFAVAGIHISFTLAQMLDLQKGKPKTQAGIRFVEMLERDEMAFDKLYCVAFQMMDAQWLAKRASYMEFNDVMKSTRSQLERELVLE DIRSVKDLPAYNLLSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10009523 [exp]	0	1
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	2.4	0.9509
AT2G10950			BSD domain-containing protein ...		Lus10027706 [exp]	2.4	0.9563
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	3.5	0.9536
AT1G10660			unknown protein		Lus10038056 [exp]	4.1	0.9348
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	4.2	0.9444
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	5.1	0.9426
AT4G27130			Translation initiation factor ...		Lus10027181 [exp]	6.0	0.9483
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	8.1	0.9237
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10017354 [exp]	8.5	0.9283
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	10.4	0.9147

Compare expression of checked genes

Lus10009523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.