Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02900 112 / 3e-31 unknown protein AT5G16660 96 / 4e-25 unknown protein AT1G42960 54 / 4e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026866 [exp] 95 / 5e-25 AT5G16660 119 / 7e-35 unknown protein Lus10012242 [exp] 50 / 7e-08 AT1G42960 163 / 8e-52 unknown protein Lus10016034 [exp] 50 / 9e-08 AT1G42960 160 / 2e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G078100 [exp] 120 / 1e-34 AT5G16660 134 / 1e-40 unknown protein Potri.019G041700 [exp] 109 / 3e-30 AT5G16660 134 / 9e-41 unknown protein Potri.007G064100 [exp] 54 / 4e-09 AT1G42960 147 / 1e-45 unknown protein Potri.005G254200 [exp] 52 / 3e-08 AT1G42960 141 / 5e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009524 pacid=23145721 polypeptide=Lus10009524 locus=Lus10009524.g ID=Lus10009524.BGIv1.0 annot-version=v1.0 ATGGCGACCTCCTTCGCTCCAGCTACCGTTTCGATCTCAGGTACTTCCTCTGAAATCTGCTCCTGTTTCGCGTCCTCTTCCTTTTCGTTTGTTCTGCCGA TTCCTGCTAGCTTCCAACTGTTATCTGATACTGCATCGCGGCAGCGCTTCGCAGGCGAGCTTGGTTCAAGGAAGGTTGATGCGTTCAGAACATCATCCAA ATTGATTTTGCAGAAGAGATGTAACAAAGTTCAGGCTAACAACAAGCTCTCAGTTCGTGCAGAGTACAGTGGCAACAGAGGCGGCGGTGGTGACTTCGCT GCTGGGTTTATCATCGGAGGAGCCTTGTTCGGAAGCTTAGCTTATGTGTTCGCCCCTCAGATCAGGAAAGCAATACTAAACGAGGATGAACACGGTTTCC GCAAACCCAGGAAACTCTACTACGAGGACGAAGGAGTCTTTGAAGGTGGCTTAGAGAAAACAAGGGAGACGCTGAATGCAAAGATCGGCCAGCTGAACAG TGCCATCGACAAAGTGGCTTCTCGTCTGACAGGAGGCGGCGGCAGCAGCAAGAACAACGCAACGCCGCCTTACGATACTGCACCAGAGATCGAATTCACC TTGTGA
AA sequence Show only first row Show all	>Lus10009524 pacid=23145721 polypeptide=Lus10009524 locus=Lus10009524.g ID=Lus10009524.BGIv1.0 annot-version=v1.0 MATSFAPATVSISGTSSEICSCFASSSFSFVLPIPASFQLLSDTASRQRFAGELGSRKVDAFRTSSKLILQKRCNKVQANNKLSVRAEYSGNRGGGGDFA AGFIIGGALFGSLAYVFAPQIRKAILNEDEHGFRKPRKLYYEDEGVFEGGLEKTRETLNAKIGQLNSAIDKVASRLTGGGGSSKNNATPPYDTAPEIEFT L

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02900			unknown protein		Lus10009524 [exp]	0	1
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	2.0	0.7846
AT1G22790			unknown protein		Lus10028733 [exp]	3.2	0.7511
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	3.3	0.8026
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10038679 [exp]	5.5	0.7495
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	6.9	0.7338
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	9.5	0.7566
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	11.0	0.7537
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	13.0	0.7296
AT1G08530			unknown protein		Lus10021985 [exp]	16.1	0.7345
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	16.7	0.7490

Compare expression of checked genes

Lus10009524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.