Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53280 554 / 0 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) AT3G14990 489 / 8e-173 AtDJ1A DJ-1 homolog A, Class I glutamine amidotransferase-like superfamily protein (.1.2.3) AT4G34020 345 / 6e-115 AtDJ1C DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) AT3G02720 45 / 0.0001 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020345 [exp] 772 / 0 AT1G53280 564 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10019849 [exp] 332 / 4e-110 AT4G34020 537 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10014067 [exp] 289 / 1e-93 AT4G34020 454 / 1e-157 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10031360 [exp] 59 / 4e-09 AT3G02720 624 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10010964 [exp] 58 / 8e-09 AT3G02720 635 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G111900 [exp] 615 / 0 AT1G53280 581 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Potri.009G100900 [exp] 358 / 4e-120 AT4G34020 551 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Potri.017G143880 [exp] 53 / 2e-07 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076000 [exp] 52 / 4e-07 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076200 [exp] 52 / 6e-07 AT3G02720 603 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF01965 [flax] [poplar] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Lus10009525 pacid=23145710 polypeptide=Lus10009525 locus=Lus10009525.g ID=Lus10009525.BGIv1.0 annot-version=v1.0 ATGCCATCACTACGCCACGTAGCACCTTCTCCATTCTTCCTCTTCACCACAACCTCCGCTCTTTTCTCCTTCTCATCCTCCTCCTCCCTCACTTTCACTC CCAAGCTCCCTCCGCCGCTCGCGCTTCCACTCCGTCGCTTCTCGCTCTCTGCCGTCGCCGGAATGGCTTCCTCTGCTAAGAAGGTTTTGGTGCCGATTGC GAATGGAACGGAGCCGATGGAGGCTGTGATCACGATCGATGTGCTTAGAAGAGCTGGCGCTGATGTTACTGTAGCTTCAGTCGGGAAGGAACTACGAGTT GAGGCTGCTCACGGCGTCAAAATGATCGCCGATTCTCTCGTTTCTAACTGCGTCGATCACGTTTTCGATCTCGTCGCACTTCCGGGTGGTATTCCCGGTG CTACGAATTTGAGAGATTGTAAAGACCTGGAGAACTTGGTCAAGAAGCAGGCTACAGATGGACGACCTTATGCTGCAGTCTGCGCCTCTCCTGCAGTGGC ACTTGGTTCATGGGGTTTACTGAAGGGGCTAAAAGCAACATGTTATCCGGCTTTCATGGACCAGCTGAAATCTTCTGCAACTGCTGTTGAATCGAGAGTG CAGAAGGATGGCATAGTAATCACCAGTCGTGGACCTGGCACAACCATGGAGTTTGCTCTTGCTTTGGTTGAGCAACTGTATGGAAAAGAGAAGGCTGCTG AGGTTTCAGGACCATTGGTGATGCGTCCCAACCATGGATCTGAGTACACTATCAAAGAGCTTAACTCTATCCCCTGGGGAATCGAAGATGTTCTCGTGCC CATTGCTAACGACTCTGAGGAAATGGAAGCCACCATGATCATTGATATTCTGCGGAGAGCTAAAGCAAACGTTGTAGTGGCCTCTGTTGAAGAAAAGTTA GAGATAAACTGCCGACGAGAGGTCAAACTGGAGGCAGATATGCTGCTTGATGAGGCTTCTAAACTGTCGTACCACCTTATTGTCTTACCGGGTGGACTCG GTGGTGCTCAAACATTTGCCAAGTCGGAAAAATTGGTAAACCTGCTGAAGAAGCAACGTGAATCGAATCTCCCTTACGGAGCTTTATGTGCCTCTCCGGC GTACGTCCTGAAGCCTCATGGCCTTCTAAAGGGCAAAAAGGCCACAGCTTTTCCGCCCATGTGCGAGAAGCTATCGGACCAGAGCGAAGTCGAGAACAGG ATAGTGGTGGACGGCAACCTGATCACAAGCCGTGGCCCTGGAACTTCAATGGAGTTTTCACTTGCAATCGTGGAGAAGCTGTTCGGACGCTCCAAGGCGA TAGAGCTTGCAAAGACGATGCTCTTCACCGTGTAA
AA sequence Show only first row Show all	>Lus10009525 pacid=23145710 polypeptide=Lus10009525 locus=Lus10009525.g ID=Lus10009525.BGIv1.0 annot-version=v1.0 MPSLRHVAPSPFFLFTTTSALFSFSSSSSLTFTPKLPPPLALPLRRFSLSAVAGMASSAKKVLVPIANGTEPMEAVITIDVLRRAGADVTVASVGKELRV EAAHGVKMIADSLVSNCVDHVFDLVALPGGIPGATNLRDCKDLENLVKKQATDGRPYAAVCASPAVALGSWGLLKGLKATCYPAFMDQLKSSATAVESRV QKDGIVITSRGPGTTMEFALALVEQLYGKEKAAEVSGPLVMRPNHGSEYTIKELNSIPWGIEDVLVPIANDSEEMEATMIIDILRRAKANVVVASVEEKL EINCRREVKLEADMLLDEASKLSYHLIVLPGGLGGAQTFAKSEKLVNLLKKQRESNLPYGALCASPAYVLKPHGLLKGKKATAFPPMCEKLSDQSEVENR IVVDGNLITSRGPGTSMEFSLAIVEKLFGRSKAIELAKTMLFTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	0	1
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	1.7	0.8958
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	1.7	0.8855
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10008401 [exp]	2.0	0.8757
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	2.4	0.8928
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	4.6	0.8615
AT5G65250			unknown protein		Lus10000635 [exp]	8.9	0.8496
AT5G22280			unknown protein		Lus10034182 [exp]	9.1	0.8088
AT3G22530			unknown protein		Lus10004901 [exp]	9.2	0.8672
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	9.4	0.8473
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	9.5	0.8665

Compare expression of checked genes

Lus10009525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.