Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59480 553 / 0 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 553 / 0 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06020 548 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 541 / 0 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 449 / 1e-159 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 431 / 3e-151 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 407 / 2e-142 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 227 / 8e-75 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 177 / 2e-51 FLN1 fructokinase-like 1 (.1) AT1G69200 145 / 1e-38 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013611 [exp] 609 / 0 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 597 / 0 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 514 / 0 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 426 / 5e-150 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 425 / 8e-150 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 417 / 4e-146 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 414 / 2e-144 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 408 / 2e-142 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 370 / 1e-128 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029000 [exp] 568 / 0 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 551 / 0 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 442 / 9e-157 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 443 / 3e-156 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 418 / 2e-146 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 417 / 3e-146 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 415 / 2e-145 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.016G109600 [exp] 157 / 1e-43 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.008G097300 [exp] 158 / 2e-43 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.011G114100 [exp] 86 / 1e-18 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10009526 pacid=23145730 polypeptide=Lus10009526 locus=Lus10009526.g ID=Lus10009526.BGIv1.0 annot-version=v1.0 ATGGCCTCCAATGGCGGATCAACGGACTCCTCTCTGATCATCAGCTTTATGGCCTCCAATGGCGGATCAACGGACTCCTCTCTGATCGTCAGCTTCGGCG AGATGCTGATCGACTTCCCCCCCACTGTAGCGGGTGTCTCCCTCGCCGAGGCTCCAGGCTTCCGCAAGGCGCGAGGCGGCGCACCCGCGAACGTCGCGAT CGCCGTCTCCAGACTCGGCGGGAAATCCGCCTTTGTCGGAAAGCTTGGCGACGACGAGTTCGGCCACATGCTGGCCGGGATCTTGAAGGAGAACGGCGTG ATCGGTGACGGCATCAACTTCGACAAGGGAGCCAGGACCGCACTCGCCTTCGTCACTCTCAAGGCCGACGGCGACCGTGAGTTCATGTTTTTCCGTAACC CCAGCGCCGACATGCTCCTCCAGCCCGAGGAGCTCAATCTCGAGCTCATCAGATCTGCCAAAGTTTTCCACTACGGGTCAATAAGCTTGATAGTGGAGCC ATGCAGATCGGCACACATGAAGGCGATGGAGGCCGCCAAGGATGCCGGCGCACTTCTGTCATATGATCCGAACCTGAGGCTACCTCTGTGGCCTTCCCCT GAAGAGGCTCGTGAGCAGATTCTCAGCATCTGGGACAAGGCGGAGATCATTAAGGTCAGCGATGTCGAGCTTGAGTTCCTCACCGGGAGCGATAAGATCG ATGATGCTTCTGCAATGTCCCTCTGGCATGACAACTTGAAGCTGCTACTTGTCACCCTCGGTGAAAAGGGTTGCAATTACTACACCAAGGGGTTCCACGG AACAGTCAAGGCGTTCCACGTGAACGCAGTGGACACGACAGGAGCCGGTGACTCCTTCGTTGGGGCTCTACTCACCAAGATCGTCGACGACCGGTCCATT CTCGAGGATGAAGCGAGGTTGAAGGAGGCTCTAAGATTCGCAAACGCGTGCGGAGCCATCACAACGACCAAAAAGGGTGCAATCCCGGCTTTGCCCACCG AAGCCGATGTTCTTTCCTTCATCAAATCGTCCTCCGATCACTAG
AA sequence Show only first row Show all	>Lus10009526 pacid=23145730 polypeptide=Lus10009526 locus=Lus10009526.g ID=Lus10009526.BGIv1.0 annot-version=v1.0 MASNGGSTDSSLIISFMASNGGSTDSSLIVSFGEMLIDFPPTVAGVSLAEAPGFRKARGGAPANVAIAVSRLGGKSAFVGKLGDDEFGHMLAGILKENGV IGDGINFDKGARTALAFVTLKADGDREFMFFRNPSADMLLQPEELNLELIRSAKVFHYGSISLIVEPCRSAHMKAMEAAKDAGALLSYDPNLRLPLWPSP EEAREQILSIWDKAEIIKVSDVELEFLTGSDKIDDASAMSLWHDNLKLLLVTLGEKGCNYYTKGFHGTVKAFHVNAVDTTGAGDSFVGALLTKIVDDRSI LEDEARLKEALRFANACGAITTTKKGAIPALPTEADVLSFIKSSSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	0	1
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	1.0	0.9668
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	2.4	0.9391
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	2.8	0.9331
AT1G20950			Phosphofructokinase family pro...		Lus10016047 [exp]	3.6	0.9180
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	3.9	0.9296
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	4.2	0.9253
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	4.6	0.9244
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	4.9	0.9231
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	5.2	0.9230
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	5.5	0.9225

Compare expression of checked genes

Lus10009526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.