Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17560 144 / 6e-44 BolA-like family protein (.1) AT1G55805 57 / 2e-10 BolA-like family protein (.1) AT4G26500 51 / 1e-07 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT5G09830 37 / 0.0009 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020347 [exp] 308 / 8e-109 AT5G17560 158 / 2e-49 BolA-like family protein (.1) Lus10032905 [exp] 58 / 4e-10 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10015605 [exp] 57 / 1e-09 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10026101 [exp] 52 / 3e-09 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 51 / 9e-09 AT1G55805 119 / 2e-35 BolA-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074100 [exp] 167 / 3e-53 AT5G17560 156 / 6e-49 BolA-like family protein (.1) Potri.012G036800 [exp] 49 / 5e-08 AT1G55805 130 / 6e-40 BolA-like family protein (.1) Potri.011G165400 [exp] 49 / 3e-07 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.001G468300 [exp] 45 / 6e-06 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [flax] [poplar] BolA BolA-like protein
Representative CDS sequence Show only first row Show all	>Lus10009527 pacid=23145737 polypeptide=Lus10009527 locus=Lus10009527.g ID=Lus10009527.BGIv1.0 annot-version=v1.0 ATGGCGAAGACTCTAATGGCGCGCCCGCAGATACTATCATCAACAACAACTCACTTCGTCCTCCTGCGTCGCGCTTTACTCTCTTCTTCGCTTCCCTCGC CGATACCGACATCTCGTATCTGTCCAAGAAGCTCCCAGTTCCGTTCTTACTCGGCGGCGTTCACTCCTCCTCCCAGAACCTCAGAGCTTCAGCTTCAAAG CTCCCGGTGCAAGCTATTCACCTCCGGATTCCGCTCCTCCGCGAATCGCAGGTTCGCCGCGGGAGCTACTCCTGTGAACGATGCTAACTCCATTGACTCG CCGCTCATGGCGTCCATGAAGGAAAAGATTATGAAGGAGCTAGAGGCAGAGTCGGTAACAGTTAAAGATGCATACGGTGATGGCCGGCATGTGAGCATTG ATGTCGTTTCGTCAGTATTCGAGGGGCAGTCGGCAGTGAACAGGCAGAGGATGGTGTACAAAGCCATATGGGAAGAACTTCAGAGCACAGTTCACGCAGT TGACCAGATGACCACCAAGACTCCCTCTGAAGCTTCCAACAAGTAA
AA sequence Show only first row Show all	>Lus10009527 pacid=23145737 polypeptide=Lus10009527 locus=Lus10009527.g ID=Lus10009527.BGIv1.0 annot-version=v1.0 MAKTLMARPQILSSTTTHFVLLRRALLSSSLPSPIPTSRICPRSSQFRSYSAAFTPPPRTSELQLQSSRCKLFTSGFRSSANRRFAAGATPVNDANSIDS PLMASMKEKIMKELEAESVTVKDAYGDGRHVSIDVVSSVFEGQSAVNRQRMVYKAIWEELQSTVHAVDQMTTKTPSEASNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17560			BolA-like family protein (.1)		Lus10009527 [exp]	0	1
AT5G17560			BolA-like family protein (.1)		Lus10020347 [exp]	1.4	0.8689
AT5G38060			unknown protein		Lus10004070 [exp]	4.7	0.8542
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Lus10028164 [exp]	12.4	0.7173
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	14.4	0.8410
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	16.7	0.8152
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	17.0	0.8158
					Lus10033414 [exp]	19.3	0.7905
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	22.2	0.8248
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	22.9	0.8331
AT4G37090			unknown protein		Lus10019656 [exp]	26.3	0.7704

Compare expression of checked genes

Lus10009527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.