Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35930 1034 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 82 / 1e-15 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT5G36880 78 / 2e-14 ACS acetyl-CoA synthetase (.1.2) AT1G20510 76 / 1e-13 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G30520 72 / 2e-12 AAE14 acyl-activating enzyme 14 (.1) AT4G19010 69 / 8e-12 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 69 / 1e-11 AMP-dependent synthetase and ligase family protein (.1) AT1G51680 64 / 3e-10 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT3G21240 62 / 2e-09 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G77240 59 / 2e-08 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020348 [exp] 959 / 0 AT5G35930 526 / 4e-172 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 84 / 4e-16 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 81 / 3e-15 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10036027 [exp] 77 / 2e-14 AT1G30520 436 / 3e-150 acyl-activating enzyme 14 (.1) Lus10041499 [exp] 72 / 2e-12 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10012595 [exp] 72 / 2e-12 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10021431 [exp] 69 / 2e-11 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10024863 [exp] 62 / 2e-11 ND 38 / 4e-04 Lus10016135 [exp] 68 / 3e-11 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043800 [exp] 1223 / 0 AT5G35930 1127 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.014G140900 [exp] 77 / 6e-14 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.005G248500 [exp] 75 / 2e-13 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 73 / 5e-13 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 72 / 2e-12 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.011G164100 [exp] 69 / 2e-11 AT1G30520 645 / 0.0 acyl-activating enzyme 14 (.1) Potri.001G036900 [exp] 67 / 4e-11 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.008G031500 [exp] 66 / 8e-11 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 66 / 9e-11 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.018G094200 [exp] 66 / 1e-10 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme CL0186 [flax] [poplar] Beta_propeller PF01011 [flax] [poplar] PQQ PQQ enzyme repeat
Representative CDS sequence Show only first row Show all	>Lus10009528 pacid=23145698 polypeptide=Lus10009528 locus=Lus10009528.g ID=Lus10009528.BGIv1.0 annot-version=v1.0 ATGAAGTCGGTCGAATATCTCAGTTTCCGACTCCGATCGTCTCTGGACGATGCCGGTGGCGAGTGTAAACTCTTCTTCTCGCGCAGCTTAATCCCAGGCA GCTCGAATCAATGGCAGGATGAGGAAGAGACGAAGAAGGCGTGTTATCAGCCGAAGGTAGTTGGGATTTACATGGCACCATCAGTGGAGTATATAGTGTC TGTTCTTTCAGTTTTGAGATGTGGGGAGGCATTTCTGCCGCTTGATCCGGGTTGGCCAAGGACGAGAATACTGCAAATTGTTTCATCGTCCAGTGTTGAT CTCATCGTCACTTGTGCTTCATTGTTTGGGGAAGATGGTTCTGTTGATGAGCCTAACTGGCTTGCTGAATCAACTGGACGTTCGATCTTGTTCTTCACCA TGAAGGAAAGCATTGAAGGGTGCGGTTTGTCTGCATCTGGGTTGGTTTGGCCTTGCCAGAGGGGTTCACAGAGGTCATTCTGCTATCTGATGTATACTTC TGGGTCAACCGGGATCCCTAAAGGTGTCTGTGGAACTGAGCAAGGTCTGTTGAATCGGTTTCAGTGGATGCATGAGCTATATCCTGTGGACAGTGAGGAA ATTTTGATCTTCAAAGCATCGATAAGCTTTATTGATCATCTGCAAGAGTTTCTGTGTGCTATGCTTAGTGCCTGTACAGTGGTTATACCTCCTTCCAGGG AGCTGAAAGACAATCCCTCTTCAATCGTCAATTTTCTCCAGGCCTATTCAGTTAACAGGCTAACCACTGTTCCTTCACTCATGAAAGAAATCATTCCTGC TTTGCGGAATGATCATAAGTTGTGGATCCAAAATTCATTGAAGTTATTAATTATGAGTGGGGAAGTATTTCCTTTGCCCTTGTGGGACACGCTTTCTAAC TTGCTTCCCAAGACCTCTATTCTGAATATATATGGGAGTACAGAGGTGTCTGGAGACTGTACATATTTTGATTGCAAGAAGTTGCCAATGATGCTGGAAA CTGAGGAACTAGGTAGTGTCCCAATTGGTGTGCCTATTTATGGCTGTGCTGTTGAGATTATTGGTGAAGCTGTTGCACTGGATTGGGGAGAAATATTCGT CAGTGGCCTGTGTGTTTCTGCAGGTTACTTTTCACATTTGAGTCCTGTGTCTTCTGACTTGGTTAAATTGCATGAGAATTCCATATGTAACTGTTCATCG GATGATTGTGGGGCTCGGTTATTCTACAGAACCGGTGACTGGGGGAAAAAACTCCAATCTGGTGACTTGGTTTTCATGGGAAGAAAAGATCGTACTATAA AAGTGAATGGGCAACGAGTAGCCTTGGAGGAGATTGAAAGTGTACTCAGGGGACATCCTAATATTGTTGATGCTGCAGTGGTAGCTCGTCTTAGTCCAGG ACATGATTCATTTCTCACAGCATATTTAGTGTTAATAGAGAAAGATAAGTCTCTTCTTAATTTCCAGTCTTCAATCAGGAGTTGGATGATTGACAAAGTT CCTCTCTCCATGATCCCTAACAGCTTCACAGTGGTCAAATCGTTACCCATTTCTTCCAGTGGTAAAGTTGATTATTCTTCCTTGGAGATTTCAAAGGGTT CAACCAAGCCTGATCAGGTTGAGGTGGGCAGTCCTCTCAGCAATGACCTCTTGCATGTTATCAAGAAGATATTTTCAGATGCACTGTCAGTTGCAGAGGT TACTGGAGATGATGATTTCTTCTTGCTGGGTGGGAACTCGATCACTGCAGCAAATGTTTCTTACAGGCTAGGAATCAACTTGAAATTGCTTTATAGCTTT CCTACTCCATCTAAACTTATTGGTGCGCTCAAAGACCTGCAAATATGCAAACGAGACGTGCAACCTGACGCAAAAGCAACAGATAACCTGGACAGTTCTC CTCAATTTAATTTTGTGACTGCATCTCCTCTCAGCCTTAAACAGAAATGGCATCTGAAGAACCATTCTGAAAAGAATGAAACTCGTACTCCTCCAGCTAA GCAGCTTAAGCTAAGTTTGGATGGGAATCATCCTTCAAATTTTGCTAGTTCCGGTGGTGAACATATTTGGCGTACCTTGATTCCAACGTGGCTTATTTTC AGCCGGTGCAACAAGGTTATGCAGGAGAGAGAATATAGGTCTGGTGATCAGAACCAATTAATTTTCCAGATAGACGATACAAGGAAGAGGGAACCTTGTT TACAAGAGTTATGGAAAGTTAATATGGAGTCTTGTGTGGATGCATCTCCGCTTCTTGTGTTCAAAGATCGAGAAGTTTACTTGCTTATAGGATCTCATTC ACACAAGTTCATATGCGTTAATGCTAGAAGTGGTTCCATCACGTGGGAGGTCAAACTAGATGGAAGAGTCGAGTGCTCAGCAGCAATCATCGTCGACTAT TCTCAGGTGGTAGTTGGATGCTATAAGGGGAAGATATACTTTCTCGATCTTTTCAGTGGCAATCTGTGTTGGAGTTTCCAAACCGGCGGTGAGGTTAAGT GCCAACCAGTTGTAGACGTGCAGAGACACCTAATCTGGTGCGGTTCACATGATCACAACTTGTATGCTCTTGACTATAAAAACCAGTGCTGCGTCTACAA GCTCGATTGCGGTGGCAGCATCTTTGGCTCTCCTGCCATTGACGAGGTCGGTAAAGCTCTGTATGTCAGTTCTACCAGTGGCCGTGTAACTGCTCTATCG TTGGAGGGAACCCCATTTCACTGTTTGTGGAAGAGGGAGCTAGAGGTACCCATCTTCGGAACGCTTTCACTCGACTCTCAAAGTAGAAATGTTGTATGCT GTCTAGTAGATGGTAACATAATAGCATTGGATTCCAGTGGTTCCATTAAGTGGAAGAGTACAGTTGGCGGTCCTGTATTCGCTGGAGCCTGCACATCTTC TGTGCTTCCTCGCCAGGTGATTATATGTTCAAGAAATGGAAGTGTTTACTCCCTAGATAAGGAAAATGGAGATCGAATCTGGGAACACCAAGTCGGAAAT CCGATAACCGCGTCAGCTTACATCGACGAACACCTACAACTACTCGTTCCTGAACCAGTCTCCTCATCATCATCCTCTCACCGGCTGATCTGCGTGTGTT CGAGTTCCGGAACCATACACTTGCTGCAGATCGACGTTGGAAAACCCGAACATTGCTCCACAGTTGAGGAATTCGCACGGTTTGAGCTCCCCGGAGACAT CTTCTCGTCACCAGTGATGGTCGGAGGCAGGATCTTCGTTGGTTGTAGAGATGATTACGTGCGTTGCATTTCAATGGATACCGGAAAGTTAACTAGCTCG ACTCGGATGACTAAATAA
AA sequence Show only first row Show all	>Lus10009528 pacid=23145698 polypeptide=Lus10009528 locus=Lus10009528.g ID=Lus10009528.BGIv1.0 annot-version=v1.0 MKSVEYLSFRLRSSLDDAGGECKLFFSRSLIPGSSNQWQDEEETKKACYQPKVVGIYMAPSVEYIVSVLSVLRCGEAFLPLDPGWPRTRILQIVSSSSVD LIVTCASLFGEDGSVDEPNWLAESTGRSILFFTMKESIEGCGLSASGLVWPCQRGSQRSFCYLMYTSGSTGIPKGVCGTEQGLLNRFQWMHELYPVDSEE ILIFKASISFIDHLQEFLCAMLSACTVVIPPSRELKDNPSSIVNFLQAYSVNRLTTVPSLMKEIIPALRNDHKLWIQNSLKLLIMSGEVFPLPLWDTLSN LLPKTSILNIYGSTEVSGDCTYFDCKKLPMMLETEELGSVPIGVPIYGCAVEIIGEAVALDWGEIFVSGLCVSAGYFSHLSPVSSDLVKLHENSICNCSS DDCGARLFYRTGDWGKKLQSGDLVFMGRKDRTIKVNGQRVALEEIESVLRGHPNIVDAAVVARLSPGHDSFLTAYLVLIEKDKSLLNFQSSIRSWMIDKV PLSMIPNSFTVVKSLPISSSGKVDYSSLEISKGSTKPDQVEVGSPLSNDLLHVIKKIFSDALSVAEVTGDDDFFLLGGNSITAANVSYRLGINLKLLYSF PTPSKLIGALKDLQICKRDVQPDAKATDNLDSSPQFNFVTASPLSLKQKWHLKNHSEKNETRTPPAKQLKLSLDGNHPSNFASSGGEHIWRTLIPTWLIF SRCNKVMQEREYRSGDQNQLIFQIDDTRKREPCLQELWKVNMESCVDASPLLVFKDREVYLLIGSHSHKFICVNARSGSITWEVKLDGRVECSAAIIVDY SQVVVGCYKGKIYFLDLFSGNLCWSFQTGGEVKCQPVVDVQRHLIWCGSHDHNLYALDYKNQCCVYKLDCGGSIFGSPAIDEVGKALYVSSTSGRVTALS LEGTPFHCLWKRELEVPIFGTLSLDSQSRNVVCCLVDGNIIALDSSGSIKWKSTVGGPVFAGACTSSVLPRQVIICSRNGSVYSLDKENGDRIWEHQVGN PITASAYIDEHLQLLVPEPVSSSSSSHRLICVCSSSGTIHLLQIDVGKPEHCSTVEEFARFELPGDIFSSPVMVGGRIFVGCRDDYVRCISMDTGKLTSS TRMTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	0	1
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	1.0	0.9293
AT1G79190			ARM repeat superfamily protein...		Lus10016753 [exp]	1.4	0.9232
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	3.5	0.8890
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	4.0	0.9045
AT1G12930			ARM repeat superfamily protein...		Lus10041503 [exp]	4.7	0.8823
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	4.9	0.9096
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	5.3	0.8741
AT1G58230			binding (.1)		Lus10042866 [exp]	5.5	0.9183
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	6.0	0.8913
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	6.5	0.8871

Compare expression of checked genes

Lus10009528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.