Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72175 261 / 4e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) AT1G22510 249 / 4e-85 RING/U-box protein with domain of unknown function (DUF 1232) (.1), RING/U-box protein with domain of unknown function (DUF 1232) (.2) AT4G33940 155 / 2e-47 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020349 [exp] 380 / 7e-137 AT1G72175 261 / 8e-90 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Lus10027921 [exp] 167 / 5e-52 AT4G33940 251 / 3e-84 RING/U-box superfamily protein (.1) Lus10012062 [exp] 163 / 1e-50 AT4G33940 252 / 2e-84 RING/U-box superfamily protein (.1) Lus10014366 [exp] 138 / 6e-39 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078800 [exp] 290 / 3e-101 AT1G72175 259 / 3e-89 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.013G105400 [exp] 282 / 2e-98 AT1G72175 263 / 5e-91 RING/U-box protein with domain of unknown function (DUF 1232) (.1) Potri.004G143900 [exp] 151 / 5e-46 AT4G33940 221 / 2e-72 RING/U-box superfamily protein (.1) Potri.014G154600 [exp] 40 / 0.0006 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06803 [flax] [poplar] DUF1232 Protein of unknown function (DUF1232)
Representative CDS sequence Show only first row Show all	>Lus10009529 pacid=23145706 polypeptide=Lus10009529 locus=Lus10009529.g ID=Lus10009529.BGIv1.0 annot-version=v1.0 ATGGACGACGGACCTCCGGCGAACGATTGCTGCTCTATTTGCCATGGACACTTCAAGGTCCCTTGCCAGGCCAACTGCTCTCACTGGTTCTGCGGTGATT GCATTATGCTTGTTTGGCAACATGGACCTCCAGTTCAGGCGTGTAAGTGTCCACTCTGTCGTCGGACGATCACGTTATTGGTTCCCGGTGAAGCTGCACT GAGAGAGCGTGATAATGTTGAAGTCTCGGAGGTTCTTGAGAAGGTTCAGAGATACAATCGTATCTACGGTGGAGAAACTTCAGGCCTGATCCAGAGAATG CAAGATCTTCCATTTTTCATCAGGAGGTTGTTCCGAGAGATAATGGATCCGCAAAGATCGCTTCCTCTCGTCATTAGAGCTCGGGTTTATATTGCAGTGA TATTGAGCGCGATATACACTCTCAGCCCAATAGATATCATTCCAGAAGGGATACTGGGTATTGTGGGGCTCCTGGACGATGCTCTTATACTGCTCATATG CTTTCTCCACGTTGCTGCAATTTATCGTTCCGTGCTGCATCACCGTCATGGCGGTTCGTGA
AA sequence Show only first row Show all	>Lus10009529 pacid=23145706 polypeptide=Lus10009529 locus=Lus10009529.g ID=Lus10009529.BGIv1.0 annot-version=v1.0 MDDGPPANDCCSICHGHFKVPCQANCSHWFCGDCIMLVWQHGPPVQACKCPLCRRTITLLVPGEAALRERDNVEVSEVLEKVQRYNRIYGGETSGLIQRM QDLPFFIRRLFREIMDPQRSLPLVIRARVYIAVILSAIYTLSPIDIIPEGILGIVGLLDDALILLICFLHVAAIYRSVLHHRHGGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72175			RING/U-box protein with domain...		Lus10009529 [exp]	0	1
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	1.7	0.8767
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	2.0	0.8367
AT3G29270			RING/U-box superfamily protein...		Lus10015732 [exp]	6.6	0.8154
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	7.1	0.8442
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	9.6	0.8512
AT1G01940			Cyclophilin-like peptidyl-prol...		Lus10009237 [exp]	11.5	0.8146
AT3G59490			unknown protein		Lus10013685 [exp]	12.8	0.7787
AT5G05670			signal recognition particle bi...		Lus10030593 [exp]	16.8	0.7537
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	18.6	0.8006
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	20.1	0.8225

Compare expression of checked genes

Lus10009529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.