Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16680 394 / 1e-114 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G02890 216 / 4e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G43770 93 / 2e-19 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G17850 72 / 7e-14 unknown protein AT5G61100 55 / 1e-07 unknown protein AT5G61110 53 / 2e-07 zinc ion binding (.1) AT3G01460 54 / 1e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 49 / 2e-05 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT1G77250 49 / 2e-05 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G61120 47 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020350 [exp] 2134 / 0 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 81 / 4e-15 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035396 [exp] 62 / 2e-09 AT5G61120 76 / 4e-15 unknown protein Lus10030998 [exp] 59 / 1e-08 AT5G61120 71 / 1e-13 unknown protein Lus10031468 [exp] 50 / 2e-05 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10008495 [exp] 50 / 3e-05 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10015213 [exp] 47 / 0.0002 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10008796 [exp] 46 / 0.0003 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 46 / 0.0003 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077900 [exp] 781 / 0 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G041900 [exp] 432 / 1e-125 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 158 / 9e-39 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G110400 [exp] 105 / 1e-23 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G189400 [exp] 97 / 1e-20 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 96 / 3e-20 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G040100 [exp] 80 / 6e-15 AT5G61120 127 / 1e-31 unknown protein Potri.013G011400 [exp] 47 / 0.0001 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.012G018300 [exp] 46 / 0.0001 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.017G072460 [exp] 47 / 0.0002 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009530 pacid=23145683 polypeptide=Lus10009530 locus=Lus10009530.g ID=Lus10009530.BGIv1.0 annot-version=v1.0 ATGCATCCGAAGGCTCAAACCAGAGTGGAATCTGGAACGTGTAACGTGTGCTCCACTCCTTGTTCATCTTGTATGCACCGGAAGCGAGCTTTTATGGGAT CAAAGGGTGATGAGGGTGATGAATTTTCCGACGAAACGTGCCACGTAGCTGAAACAAGTCAGAATTCCATTAACAAGGATGATTCCTCACCTATCAAAGG CGGCATGGCTGCCATGTTACGACATGCCACAAGTGCAGCTAGTAATGTGCCAACTGTTGATTCATGTCAGGATTCAGTGTCTGAAAGTGCAGAAATTAAA GGTAATCTGAAGATTTCGGATAGAGTGGACGTCTCAATGAAGTCTGAGGCTCTCCCAGAGTCCTCACACGTTGGATCTGTCTCGGTGGTGGACCGGATTT CTCCTAAGCCAGAGCTTATTGCATATAAGCGAGCTGCGTCTGTTAATCCTGCTGCTTGTAAAGCTGTAGAAGGCCATGGTGATAATATATCATGTGTGAC GGGTGCTGATGTGAGCAGTAACGGAGATTCTGCCAGTAAGCTGCCTGTCCAGAATAACAATCTCTCGTCCAACGTAGATGTTGTAAACTTGAACAAAGAT CCAGTCGATCAAGTTTATAGAGAAAGTTCTAAACCCATAAAGGAACACACAAGCCCAATGTTGTCACAAGAGGCAGCACCAGATATTCTACTCCGGGATA ACTCGCAAAATGGTGCAGACAACAACCTGCAAAGTAGAAGTGTAACTCCGGGTGATGGTCCAGAGGTTTCAAGTAGACTTGGTCAAGAGATCAAAGAAGA AACTGGTAATGATAGTCGATCACGTCCAGACAAAGGTAATAGTTCTTCTGTCAAAGGCGAGGAAGATGAGAAGGTTAATGAGTCAGTTGAGCTACCTCAT ACTCGTGAGTCGCCTGCACAATCTTCATCTGCAAATGATGGTGATGACTCGGAAATTGTGGAACAAGACGTGAAAGTATGTGATATCTGTGGGGACTCAG GTCAGGAAGAGAAGCTTGCATTTTGTAGTAGGTGCAGCGATGGTGCTGAACACACATATTGCATGAAGGAAATGCTCCTAGAAGTTCCGGATGGTGATTG GTTGTGTGAAGAATGCAAGATAGCTGAAGATTCCGAAAATCAGAAGCAAGGCGAGGAAGATGAGAAGGTTAACGAGTCAGTTGAGCTACCTCATACTCGT GAGTTGCCTGAACAATCTTCATCTGCCAATGATGGTGATGAGTCGGAAATTGTGGAACAAGACGTGAAAGTATGTGATATCTGTGGGGACTCAGGTCAGG AAGAGAAGCTTGCATTTTGTAGTAGGTGCAGCGATGGTGCTGAACACACATATTGCATGAAGGAAATGCTCCTAGAAGTTCCGGATGGTGATTGGTTGTG TGAAGAATGCAAGATAGCTGAAGATTCCGAAAATCAGAAGCAAGGTGCAGAGGAAAAAGATGCAAGCAAATTAACTTATCAGAGGTTGAAGAAGAGACCT GCTGAGACTGTAGAGGTGGCCGCTATTTCCAAAAGGCAGGCTGTTGACATGGATTCAGGATCGTCGAATCCATCGAGCCCTATCAAAGTCGCTGCCCTGC AGCGTAACAGCTCCTCCAGGAGTTGGGATAAGGAGAAAGTAAAGCCAAGCCATCCTGTTTATGACATTACAGAAAGTACACGATTTCCTTCAACTGGTTC ACGACTTCAAAGTCACAAGGGTACATATCTGAAGTCCAATTCCTTCAACGCAATAAGTTCCAAGTCGAAAGTTAAGCTTGTTGATGAAGTGCCACGCAAG CACAAGAGCTTTAAGGAGAGCTCCTTATCTGATAATAAGGATGGGCCTGGCAAAACAATGGGCAAATCTATGTCATTTCATTACGCAGGGTCTGGAAAAG CTGAGTCAAAAGTGAAAATGTTACCGTCAAAACTTGATAGTAAAGGATTAAAGCAAGCACGAGACTATAACACCTTTGAGAGAAGAAGTTTGCCTAAGTT AGACCGTCCTGGTGGTATGGTGGCACCGAGTTCGAAAGTCACAACACCGAAACTTGAACAAAAGCTCACTCGTAACGAAGGTGTCCAATCGTCATCGTCT GGCAACAACAGAGACTTGAATGCCGCTGCTTCTGAGGGAAGGTTGGGCAGCTTATCCAGATCAAATGCTGGCATTACCCGTAAGGGCGACGGTCCTGGTA CTTCTGTTCGATCCTCATCTCTTCATGGAGCAGGCAACGTTTCCATTGAAAGAACTACAAATCAAGCTATCCCCAAGGATGAACCCTCACCTAGTACTTC TTCGTCTGCAGAAAGAACACTGGATACCGGTGATGAAAGCTCATATGATGGCCTTCGTCCACAGAAATCATTGAGCCTGAATGAGAAAAGCAGGGCGAGT TCTGTTAGTCGCACAAGACCTGCTGGTGCAGTGGGCCTAAAAGAAGCAGGTACTAGTCGGAAAAGGAAGGATATTGGTCTTTCCGGGGAAAACCCCACAT CTGTTAGTCCTCGTGGTCCTTCTAGTGAAGCACCGGGTACTAGAAGTGTTGGTGATGAAATAAATAGAGACAGTAAACTAAAAGCTGCAATTGAAGTTGC TATGCTGAAGAGACCGGGAATTTATAGAAAGAAGATTGATCGTGACCGATCTGACGGGCTATCCTCATCAAATGTGGATGTGAACTCTCATAAGGATCCA CTGGCTAAGTTTTCAGGTTCAAATAGGCTGAAAGTAGCCACTTTTGACGAACGAGCTCATGAAGAGAAACCAGTCCTTGGCCCTTGGTCCACGGACTCTC CAAAACAATCCAACATGGGAAGTCTTAACCTATCTAATACACACTCTGTTAGTACTGCATTCCCGTTGAAAGGGGACTTAGACACAGTAAACACTTCTGC TGGAAAATCTGGTCCTATCCCACTTACAACCATTGAGAAAGCGTCCCCAATTCCAGAGCATGACTTTATCTGGCAGGGAACATTTGAGGTTAACCGGGGT GGAAAAGTTACGAATATCCATGGAGGCATTCAAGCACACTTGTCAACTTATGCATCATCCAAAGTTCTTGAAGTGGTAAACAAGTTTCCTGAGAATGTTC GTTTAGATGAAGTATCTCGTTCAAGTACGTGGCCGAGACAGTTCCAAGAAATTGGCGCTACTGGTGATAATATTGCTCTTTACTTCTTTGCCAAGGACCT TGAAAGTTACAACAAGCACTACAAGAGCTTACTGGACAATGCAATGAAACGAGATTTGGCCTTCAAAGGATACTTTGATGGTGTTGAACTCTTGATATTC CCATCCACTCAGCTTCCAGATGATTCACAACGTTGGAACATGATGTTTTTCCTTTGGGGTGTGTTCAAGGGGAGGAAATCCAGTTCTGATGATTGCCTAA GAAAGCCAGCTGTCCCCAGTTTGAATTTGGTTGCTCAGGGTGAAGAAATGGCCGTGGCTAATGTATCATCTCCGGCGAAGAGGTTCCGACCTCAATATAT AGGGAGAGAAATTCCCGCATTAGATGATCACTGCAACACTGCTGTTTCATCAAGCGACTTGAAAAACACGTATGTAGCAGAAAATGGTGCTGTGGATAAG GGAAAAGTAGACTCTGTGATCAAGGTAGAGCGGCAAGAATGTATACTCGACTGTGGTGGAACTACAAGTGTGGCATCGTCAAATCAAGTTCTGAGCAGCA GAGCTATGGCTAGCCCGGTCGACGTTGGCCGTCCAGAGTCCAGAACGGATAGAGAAGAGAAACCATGTGCTCCGGTTGTCGAGTCCAAGAACGGCTTCGA TGACAAGGAAGCACAGAAGCAAGTAGACACTTCAAATCTCCGAGCTGATGTGTCTAAACTCGAGAACCTTCAGATCGAGACTCAAAACGTAGGTGTGAGG GGCTGCATTTCTGATCAAGAGCCAGCAGTTACCAGGGAAGACGGTAGCAATACAGGTGGAGTTAACATCGTGAGAGACTTGAACGAAGTTGTTGATATGG AGATCGAACCTTGTGAGGATAGAGACGACATGGCCTCCGAGAAAAGGAAAAGGCCGCTCTTGGATCTCTCCAAGATGCCACCTGAGAGTCCTAGTAGCAT CATAGATCATGAAATGCCATGGAGTAATGCAGTAGCAAAAACTGGGTCGGTAGATGGACAAGGTGCCAACAAGAAGCGGAGAATGAGCTACGAAGGTTCT GAGTCTTCCCCACTACCTATTGGTTCTTCAGTAGAGACGAGATACGTTGAGATGTCGGGGAAGGAAGCTGTTCCTGAAAACTCGAAAGCTCCGGAGTGGT TATCTTTCCCAGCGGTGGATTCACACAGTGTGTCAATGAGGCCGAATACCATACCCTGGGGACGGGGCTCCTCGTCCGACCACCCATCATCGCGTCACGA AATCCCTAACCTTAATCTCGCTTTGGAGGAAGATGAGATAGAGACCGACACCTTACCACCCCCTCCTTCATCAAGTAAGGGAATGCTGCCTTTCATAATT TCAACAGTAGACAAGCATGCTGCTAGCCAGAATAACTCATTGCTGCCCCACCCACCCCCACCGTCGGTGGAGGAAGTGACGGAGAGAGAGGAAGAGGAGA GCGTTTCGGCGTCCCTTTCTCTATCTCTTTCCTTTCCCTTCCCGGATAAGGAACAACCGGCCAAACCACCACCGGAATATGTATCTGCTCCTTTTTGGAA GGTTCGCAGATGA
AA sequence Show only first row Show all	>Lus10009530 pacid=23145683 polypeptide=Lus10009530 locus=Lus10009530.g ID=Lus10009530.BGIv1.0 annot-version=v1.0 MHPKAQTRVESGTCNVCSTPCSSCMHRKRAFMGSKGDEGDEFSDETCHVAETSQNSINKDDSSPIKGGMAAMLRHATSAASNVPTVDSCQDSVSESAEIK GNLKISDRVDVSMKSEALPESSHVGSVSVVDRISPKPELIAYKRAASVNPAACKAVEGHGDNISCVTGADVSSNGDSASKLPVQNNNLSSNVDVVNLNKD PVDQVYRESSKPIKEHTSPMLSQEAAPDILLRDNSQNGADNNLQSRSVTPGDGPEVSSRLGQEIKEETGNDSRSRPDKGNSSSVKGEEDEKVNESVELPH TRESPAQSSSANDGDDSEIVEQDVKVCDICGDSGQEEKLAFCSRCSDGAEHTYCMKEMLLEVPDGDWLCEECKIAEDSENQKQGEEDEKVNESVELPHTR ELPEQSSSANDGDESEIVEQDVKVCDICGDSGQEEKLAFCSRCSDGAEHTYCMKEMLLEVPDGDWLCEECKIAEDSENQKQGAEEKDASKLTYQRLKKRP AETVEVAAISKRQAVDMDSGSSNPSSPIKVAALQRNSSSRSWDKEKVKPSHPVYDITESTRFPSTGSRLQSHKGTYLKSNSFNAISSKSKVKLVDEVPRK HKSFKESSLSDNKDGPGKTMGKSMSFHYAGSGKAESKVKMLPSKLDSKGLKQARDYNTFERRSLPKLDRPGGMVAPSSKVTTPKLEQKLTRNEGVQSSSS GNNRDLNAAASEGRLGSLSRSNAGITRKGDGPGTSVRSSSLHGAGNVSIERTTNQAIPKDEPSPSTSSSAERTLDTGDESSYDGLRPQKSLSLNEKSRAS SVSRTRPAGAVGLKEAGTSRKRKDIGLSGENPTSVSPRGPSSEAPGTRSVGDEINRDSKLKAAIEVAMLKRPGIYRKKIDRDRSDGLSSSNVDVNSHKDP LAKFSGSNRLKVATFDERAHEEKPVLGPWSTDSPKQSNMGSLNLSNTHSVSTAFPLKGDLDTVNTSAGKSGPIPLTTIEKASPIPEHDFIWQGTFEVNRG GKVTNIHGGIQAHLSTYASSKVLEVVNKFPENVRLDEVSRSSTWPRQFQEIGATGDNIALYFFAKDLESYNKHYKSLLDNAMKRDLAFKGYFDGVELLIF PSTQLPDDSQRWNMMFFLWGVFKGRKSSSDDCLRKPAVPSLNLVAQGEEMAVANVSSPAKRFRPQYIGREIPALDDHCNTAVSSSDLKNTYVAENGAVDK GKVDSVIKVERQECILDCGGTTSVASSNQVLSSRAMASPVDVGRPESRTDREEKPCAPVVESKNGFDDKEAQKQVDTSNLRADVSKLENLQIETQNVGVR GCISDQEPAVTREDGSNTGGVNIVRDLNEVVDMEIEPCEDRDDMASEKRKRPLLDLSKMPPESPSSIIDHEMPWSNAVAKTGSVDGQGANKKRRMSYEGS ESSPLPIGSSVETRYVEMSGKEAVPENSKAPEWLSFPAVDSHSVSMRPNTIPWGRGSSSDHPSSRHEIPNLNLALEEDEIETDTLPPPPSSSKGMLPFII STVDKHAASQNNSLLPHPPPPSVEEVTEREEEESVSASLSLSLSFPFPDKEQPAKPPPEYVSAPFWKVRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16680			RING/FYVE/PHD zinc finger supe...		Lus10009530 [exp]	0	1
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	2.0	0.9030
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10014764 [exp]	2.6	0.9408
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10034008 [exp]	12.0	0.8871
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	15.6	0.9172
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10027841 [exp]	17.7	0.9059
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	20.5	0.9029
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	23.2	0.8632
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	24.0	0.9007
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	29.7	0.8988
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	30.0	0.8435

Compare expression of checked genes

Lus10009530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.