Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64940 290 / 8e-96 CYP89A6 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) AT2G12190 284 / 2e-93 CYP89A4 Cytochrome P450 superfamily protein (.1) AT1G64950 275 / 8e-90 CYP89A5 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) AT1G64930 267 / 7e-87 CYP89A7 "cytochrome P450, family 87, subfamily A, polypeptide 7", cytochrome P450, family 87, subfamily A, polypeptide 7 (.1) AT3G03470 265 / 9e-86 CYP89A9 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1) AT1G64900 260 / 5e-84 CYP89A2 "cytochrome P450, family 89, subfamily A, polypeptide 2", cytochrome P450, family 89, subfamily A, polypeptide 2 (.1) AT5G61320 243 / 1e-77 CYP89A3 "cytochrome P450, family 89, subfamily A, polypeptide 3", cytochrome P450, family 89, subfamily A, polypeptide 3 (.1) AT3G10570 169 / 5e-49 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT5G04630 169 / 6e-49 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT5G04660 168 / 1e-48 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020356 [exp] 454 / 2e-163 AT1G64940 243 / 2e-77 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020353 [exp] 393 / 6e-136 AT1G64940 572 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10028654 [exp] 339 / 1e-114 AT1G64940 562 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020359 [exp] 328 / 1e-110 AT1G64940 550 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10020360 [exp] 325 / 2e-109 AT1G64940 613 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10010229 [exp] 310 / 4e-103 AT1G64940 574 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10002138 [exp] 265 / 2e-85 AT1G64940 586 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10013067 [exp] 223 / 7e-70 AT1G64940 472 / 4e-163 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Lus10034156 [exp] 161 / 4e-46 AT5G04660 679 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099100 [exp] 299 / 5e-99 AT1G64940 540 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.005G079600 [exp] 298 / 8e-99 AT1G64940 575 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.015G006100 [exp] 295 / 3e-97 AT1G64940 484 / 7e-168 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G088018 [exp] 291 / 3e-96 AT1G64940 605 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.007G087950 [exp] 291 / 6e-96 AT1G64950 642 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088154 [exp] 290 / 9e-96 AT1G64950 639 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.007G088086 [exp] 290 / 1e-95 AT1G64950 636 / 0.0 "cytochrome P450, family 89, subfamily A, polypeptide 5", cytochrome P450, family 89, subfamily A, polypeptide 5 (.1) Potri.001G330501 [exp] 290 / 1e-95 AT1G64940 569 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076700 [exp] 278 / 3e-91 AT1G64940 592 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1) Potri.013G076600 [exp] 275 / 5e-90 AT1G64940 578 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 6", cytochrome P450, family 87, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10009536 pacid=23145711 polypeptide=Lus10009536 locus=Lus10009536.g ID=Lus10009536.BGIv1.0 annot-version=v1.0 ATGAGGATCCTGTTGAGGAAGCGGTGGTTGGAGTTTCTCCAGTTGTGGAAGGACGAGGAGAATGTTTTCCTTCGTGTAATTCAATCCAGTAAGAGAACGA TCGTAGAAGAAGAAGAAGATAGAGCTCCTCACGATCACGCCACTGCGTACGTCGACACGCTCTTCAATCTAGAACTACCGGACGAGAAGCGGAAATTGAC AAACAGCGAGATTGCCATCCTCTGCTATGAGTTTGTCAACGCCAGTACAGACACCACCTCCAACGCCTTACCGTGGATTATGGCGAATCTAGTGAAATAT CCTCATCTCCAAACCAAGCTATTCGAGGAAATGAAATCCCTAGTCGGCGAAACGAGAACAACAGAAATCAAAGAAGAGGATCTAGAGAAGTTTCCGTACC TGAAGGCGGTGGTGCTCGAAGGATTGCGCCGCCATCCACCTGGGCATTTCCTGATGCCGCACACTGCAACATTGGCGACAGAGCTTGGCGTTGGCGAATA CTTTGTACTGAAGGGAGGGATGGTGAATTTCATGGTGGCGGAGATGGGGCTTGACCTGGATGTGTGGGAGGATCCGATGTCGTTTAAACCTGAGAGGTTC CTGGGCGATACGAAACCATTTGATATAACATCTAGTAAGGAGATTAAAATGATTCCATTTGGTGTGGGTAGGAAGATGTGTCCCGGGCATGAATTGGCCT TACTTTATTTGGAATATTTCGTTGCTAATTGGGTTTGGAGTTTCGAGTGGAAGGCGGTCGCCAACCAAAAAATTGATTTGTCAGGAAGCGCAATATAG
AA sequence Show only first row Show all	>Lus10009536 pacid=23145711 polypeptide=Lus10009536 locus=Lus10009536.g ID=Lus10009536.BGIv1.0 annot-version=v1.0 MRILLRKRWLEFLQLWKDEENVFLRVIQSSKRTIVEEEEDRAPHDHATAYVDTLFNLELPDEKRKLTNSEIAILCYEFVNASTDTTSNALPWIMANLVKY PHLQTKLFEEMKSLVGETRTTEIKEEDLEKFPYLKAVVLEGLRRHPPGHFLMPHTATLATELGVGEYFVLKGGMVNFMVAEMGLDLDVWEDPMSFKPERF LGDTKPFDITSSKEIKMIPFGVGRKMCPGHELALLYLEYFVANWVWSFEWKAVANQKIDLSGSAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10009536 [exp]	0	1
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020356 [exp]	1.0	0.9367
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	15.7	0.5818
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10009535 [exp]	19.6	0.7087
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020355 [exp]	27.5	0.6975
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	69.5	0.5827
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	109.3	0.5778
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10036199 [exp]	115.8	0.5688
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10002234 [exp]	131.2	0.5547
AT1G52540			Protein kinase superfamily pro...		Lus10019988 [exp]	192.2	0.5256

Compare expression of checked genes

Lus10009536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.