Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64970 451 / 9e-160 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT1G76090 81 / 6e-17 SMT3 sterol methyltransferase 3 (.1) AT5G13710 76 / 2e-15 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT3G18000 75 / 1e-14 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G20330 74 / 1e-14 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G73600 75 / 2e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 74 / 3e-14 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33110 49 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 48 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G23480 47 / 2e-05 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020357 [exp] 611 / 0 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10005625 [exp] 82 / 6e-17 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10023995 [exp] 77 / 8e-16 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10009056 [exp] 74 / 5e-14 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042006 [exp] 73 / 7e-14 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 73 / 9e-14 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 72 / 1e-13 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022684 [exp] 47 / 1e-05 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029498 [exp] 45 / 4e-05 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077000 [exp] 485 / 4e-173 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.001G263700 [exp] 81 / 8e-17 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 81 / 1e-16 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.002G016300 [exp] 76 / 5e-15 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.005G245800 [exp] 76 / 6e-15 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.012G047400 [exp] 76 / 9e-15 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 74 / 2e-14 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.016G056000 [exp] 67 / 4e-12 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.018G060000 [exp] 47 / 9e-06 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G188600 [exp] 44 / 0.0001 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10009537 pacid=23145733 polypeptide=Lus10009537 locus=Lus10009537.g ID=Lus10009537.BGIv1.0 annot-version=v1.0 ATGGCGGCCATCCTTCAATGTCGGCCCACGGTTGCTCCTCTACATAATAAACCACCCACCGCTCCTCTATATAATAACCCACCAACCGCCCGTCGAGAAC TATCTCCCGTCACTTTCCATCTCCGCTCTTATTTTTCATCTTCCCCACTTCATCGGAGAAGACTCACCATGGCGGCGGCGGCGGCGGAGGCGGTGGTGGA GGAGAAGCAGAGGGAGCTTAAGAAGGGGATAGCCGAGTTCTACGACGAGTCGTCTGGCGTGTGGGAGGACATCTGGGGGGACCATATGCACCACGGGTTC TACGAACCTGATGCTCGGGTTTCCGGGTCTGAGTCCGACCACCGCGCCGCTCAAATCCGGATGATCGAGGAGTCTCTCCGATTCGCCGCCGTCCCAGAGG ATGTGGAGAAGAGGCCGAAGAAGGTAGTGGATGTAGGGTGTGGAATTGGCGGGAGCTCAAGGTACTTAGCCAAGAAATATGAAGCCCAATGCCAAGGCAT AACGCTAAGCCCTGTTCAAGCACAGAGAGCCAATTCACTAGCAGCTGCGCAAGGGCTAGCTGAAAAGGCAGTCTTCCAAGTTGGTGATGCTCTGAACCAG CCATTCCCGGATGGGGAGTTTGATCTCGTCTGGTCCATGGAGAGTGGCGAGCACATGCCCGACAAAGCCAAGTTTGTGAGTGAGCTAGCTAGAGTTGCAG CACCAGGAGGCACCATGATAATAGTGACATGGTGCCATAGAGATCTGGAGAGTTCAGAGGATAGCTTGAGCAAGTGGGAGAAAGATCATCTTGATAAGAT TTGCAGAGCGTTCTATCTCCCTGAATGGTGCTCTACTTCTGACTATGTCAAGTTGCTCCAATCCCTCAATCTTCAGGATATAAGAACAGCAGATTGGTCT GCGAATGTTGCTCCATTTTGGCCGGCAGTGATCCGGTCTGCCCTTACTTGGAAGGGCTTCACTTCCATCCTCCGTACCGGTCTGAAGACCATAAGAGGAG CACTGGTGATGCCGTTGATGATCGAAGGGTTCAACAAGGGTCTGATCAAGTTCTCCATTATCACTTGCAGAAAGCCCTCCATTTAA
AA sequence Show only first row Show all	>Lus10009537 pacid=23145733 polypeptide=Lus10009537 locus=Lus10009537.g ID=Lus10009537.BGIv1.0 annot-version=v1.0 MAAILQCRPTVAPLHNKPPTAPLYNNPPTARRELSPVTFHLRSYFSSSPLHRRRLTMAAAAAEAVVEEKQRELKKGIAEFYDESSGVWEDIWGDHMHHGF YEPDARVSGSESDHRAAQIRMIEESLRFAAVPEDVEKRPKKVVDVGCGIGGSSRYLAKKYEAQCQGITLSPVQAQRANSLAAAQGLAEKAVFQVGDALNQ PFPDGEFDLVWSMESGEHMPDKAKFVSELARVAAPGGTMIIVTWCHRDLESSEDSLSKWEKDHLDKICRAFYLPEWCSTSDYVKLLQSLNLQDIRTADWS ANVAPFWPAVIRSALTWKGFTSILRTGLKTIRGALVMPLMIEGFNKGLIKFSIITCRKPSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10009537 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	4.9	0.8591
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10020357 [exp]	4.9	0.8151
AT3G58670			Protein of unknown function (D...		Lus10017645 [exp]	11.3	0.8233
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	12.5	0.8126
AT1G18440			Peptidyl-tRNA hydrolase family...		Lus10032480 [exp]	22.0	0.8038
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000874 [exp]	22.7	0.8483
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Lus10013600 [exp]	22.8	0.8197
AT1G04985			unknown protein		Lus10015157 [exp]	23.8	0.8372
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	26.7	0.8084
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10009789 [exp]	26.9	0.8138

Compare expression of checked genes

Lus10009537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.