Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37510 971 / 0 CI76, EMB1467 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020363 [exp] 749 / 0 AT5G37510 1140 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Lus10000183 [exp] 115 / 6e-30 AT5G37510 224 / 3e-70 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082800 [exp] 985 / 0 AT5G37510 1248 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Potri.017G136133 [exp] 699 / 0 AT5G37510 1252 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Potri.017G136950 [exp] 185 / 1e-54 AT5G37510 359 / 3e-120 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09326 [flax] [poplar] NADH_dhqG_C NADH-ubiquinone oxidoreductase subunit G, C-terminal CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain CL0486 [flax] [poplar] PF00384 [flax] [poplar] Molybdopterin Molybdopterin oxidoreductase CL0486 [flax] [poplar] PF10588 [flax] [poplar] NADH-G_4Fe-4S_3 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
Representative CDS sequence Show only first row Show all	>Lus10009539 pacid=23145712 polypeptide=Lus10009539 locus=Lus10009539.g ID=Lus10009539.BGIv1.0 annot-version=v1.0 ATGACCGTTCTCCAGGCCTGTGAGGTGGCCGGAGTCGATATCCCGAGGTTCTGTTATCATAGCCGGCTGTCGATCGCTGGGAACTGTAGGATGTGTCTCG TTGAGGTCGAGAAGTCGCCCAAGCCTGTAGCTTCATGCGCCATGCCTGCTCTTCCTGGGATGAAGATTAAGACTGACACGCCTTTAGCAAAGAAGGCACG TGAAGGGGTGATGGAATTCCTGTTGATGAATCATCCTTTGGATTGCCCTATCTGTGATCAGGGTGGAGAATGTGATCTTCAGGATCAGTCAATGGCATTT GGATCTGATCGAAGCAGGTTTACTGAAATGAAGCGCTCTGTGGTTGATAAGAATCTAGGCCCTCTGGTCAAGACTGTCATGACACGTTGCATCCAGTGTA CAAGGTGTGTCAGATTTGCAACTGAAGTTGCTGGCACTCAGGATCTTGGTATGTTAGGTCGCGGCAGTGGAGAAGAAATTGGAACTTACGTAGAGAAGCT AATGACCAGCGAACTCTCTGGAAATGTTATAGACATATGTCCTGTAGGTGCTCTTACATCAAAGCCTTTTGCATTTAAAGCCAGAAATTGGGAACTAAAG GGAACTGAGAGCATTGATGTAAGTGATGCTGTTGGATCCAACATTCGGATAGATAGCAGAGGTCCGGAGGTTATGCGTATCCTTCCAAGGTTAAATGAGG AAATAAATGAAGAATGGATATCCGATAAGACTAGGTTCTCCTATGATGGTTTGAAGAGGCAGCGACTCAATGATCCAATGATCCGTGCACCGGATGGACG CTTTAAAACTGTGAGCTGGCGTGATGCCTTAGCAGTTGTGGCTGAGGTGCTCCATCAGGTTAAAGCTGAAGAAATTGTCGGGATTGCTGGTCAGCTCTCT GATGCTGAGTCCATGATGGCCCTGAAGGACTTCTTGAACAAAATGGGGTCCAACAATATTTCCTGTGAAGGAAATGGCCCTAGTTCGGGTGCTGATCTTC GATCCGGGTACATCATGAACACCGGCATCAACGACCTTGAGAAGGCCGATGCTTTCCTCCTGGTTGGCACACAGAACGCTAAGAACCCAGCCATAGTTGT AGGTGCTGGACTGTTCGAAAGAGAAGACAAGGATGCTATATTCTCCACAGTCGAGACCATTGCCAAGAGCGGTAATGTCATAAGATCAGACTGGAACGGT TACAACGTGTTGCTTCTCAATGCTGCCCAAGCTGCTGCTCTCGACCTCGGTCTGGTGCTGGAGTCTAGCAAAAGCATCGAGTCAGCCAAGTTCGTCTATC TAATGGGTGCTGACGATGTGGACCTGGACAAGATCCCCAAAGACGCATTCGTTGTCTACCAAGGCCACCATGGCGACAAGAGCGTGTACCGCGCCAATGT CATTCTCCCAGCATCAGCATTCTCCGAGAAGGAAGGAACGTACGAAAACACCGAAGGATGCTCACAACAAACTTTACCCGCAGTCCCCACTGTCGGCGAC GCCAGAGACGACTGGAAGATCATCCGTGCACTCTCCGAGATAGCTGGGGCACGTCTGCCGTACGATACAGTTTCAGGCCTTCGATCCCGGATAAGGACAG TGGCGCCAAACCTCTTGAGCTTGGACGAGAGAGAGCCGGCAACTTTCGGACCTTCCTTGAAGCCCAAGGCTAATCAAAAGATCAGCTCCACTCCGTTCAA AGCTGCAGTCGAGAATTTCTACATGACGAACGCCATCACCAGGGCTTCGAAGATCATGGCGCAATGCAGTGCACAGTTGCTGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10009539 pacid=23145712 polypeptide=Lus10009539 locus=Lus10009539.g ID=Lus10009539.BGIv1.0 annot-version=v1.0 MTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAF GSDRSRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGTQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELK GTESIDVSDAVGSNIRIDSRGPEVMRILPRLNEEINEEWISDKTRFSYDGLKRQRLNDPMIRAPDGRFKTVSWRDALAVVAEVLHQVKAEEIVGIAGQLS DAESMMALKDFLNKMGSNNISCEGNGPSSGADLRSGYIMNTGINDLEKADAFLLVGTQNAKNPAIVVGAGLFEREDKDAIFSTVETIAKSGNVIRSDWNG YNVLLLNAAQAAALDLGLVLESSKSIESAKFVYLMGADDVDLDKIPKDAFVVYQGHHGDKSVYRANVILPASAFSEKEGTYENTEGCSQQTLPAVPTVGD ARDDWKIIRALSEIAGARLPYDTVSGLRSRIRTVAPNLLSLDEREPATFGPSLKPKANQKISSTPFKAAVENFYMTNAITRASKIMAQCSAQLLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	0	1
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	1.0	0.9544
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	2.4	0.9097
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	4.0	0.8955
AT1G11270			F-box and associated interacti...		Lus10013934 [exp]	4.5	0.8354
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	4.6	0.9008
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	5.9	0.8717
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	5.9	0.8950
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Lus10002910 [exp]	6.5	0.8120
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	8.5	0.8767
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	10.6	0.8501

Compare expression of checked genes

Lus10009539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.