Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17520 408 / 3e-141 MEX1, RCP1 MALTOSE EXCESS 1, root cap 1 (RCP1) (.1) AT5G17523 115 / 1e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020364 [exp] 606 / 0 AT5G17520 457 / 2e-160 MALTOSE EXCESS 1, root cap 1 (RCP1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076100 [exp] 420 / 8e-146 AT5G17520 460 / 2e-161 MALTOSE EXCESS 1, root cap 1 (RCP1) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009540 pacid=23145743 polypeptide=Lus10009540 locus=Lus10009540.g ID=Lus10009540.BGIv1.0 annot-version=v1.0 ATGGCGGCAAATTCGCTCACGTTCTCGATCCACCACAACCCCTCACTCTCTTGTCCTCCTCCTCGCTCCGTTTCTCTTCCTCCTCCATGGCGATTATCTT CCCTTAAGAAATCCCCCACCGTCGGATACTCCTTCGCTCCGTTACATCTCCGGCGACGCTCCTTTCCTCCTCTTCTCGCTATCGAATCAGACGCTCCTCG TCCTCTCCAGACCACTCATGAGGAACATCCAGTGATAAAGAGATCTGAGAGCTTTCAACAATGGGATTCGTGGACGGCCAAGTTTGCCGCAGCTGCAAAC CTCCCGTTCTTGTTACTGCAAATGCCTCAGATCACTCTCAACGCCCAGAACCTCTCCGCAGGGAACAATGCTGCTCTACTGGCAGTCCCATGGCTCGGAA TGCTGACGGGGTTGCTGGGAAATCTGTCACTTCTATCATACTTCGCCAAGAAAAGAGAGACGGAAGCAGCGGTGGTGCAAACACTGGGAGTGATTTCCAG CTACATAGTGTTGACACAGCTTGCCATGGGAGAAGCAATGCCTAGGCCCCAGTTTGTCGCTACCTCAGCTGTTATATTCGTCGGGTTGTTACTGAATTTC TTGAACTACTTCGGTAAGCTTAGTGCTGGGGTTTGGCGATTCTGGGAAGACTTCATTACAGTTGGTGGCCTCTCTGTTCTTCCTCAGGTGATGTGGTCTA CGTTTGTCCCGTACCTTCCTGAGAGTATCTTGCCTGGTGCAATATCGTTTGCTATAGCTATAACAGCTGTTATCATGGCACGGACAGGAAAGCTCTCGGA GAAAGGTGTGAAAATCATCGGGGGCTTGTCGGGATGGACTGCGACTCTTCTTTTCATGTGGATGCCTGTAGCTCAAATGTGGACGAATTTCCTCAGACCA GAAAACATCAAAGGCTTATCAGCTTCCTCTATGCTACTTGCCATGATCGGAAATGGACTTATGATTCCCCGCTCGCTCCTCATTCGTGATCTGATGTGGT TCACTGGTTCATGCTGGGCCTCGTTTTGTTACGGATATGGCAACATTCTATGCATGTACTGTTTCAGTGCAGTTAGCAAAGAATTCTTCTTGGCAACAAC AATTGGTTTACTCTCATGGATAGGAATATCTCTATGGAGAGACGCTGTGGTTCATGGGCACAACTCGCCTCTGAGCTCGCTGGGAGACTTGGTTTCAGGC TCGTAA
AA sequence Show only first row Show all	>Lus10009540 pacid=23145743 polypeptide=Lus10009540 locus=Lus10009540.g ID=Lus10009540.BGIv1.0 annot-version=v1.0 MAANSLTFSIHHNPSLSCPPPRSVSLPPPWRLSSLKKSPTVGYSFAPLHLRRRSFPPLLAIESDAPRPLQTTHEEHPVIKRSESFQQWDSWTAKFAAAAN LPFLLLQMPQITLNAQNLSAGNNAALLAVPWLGMLTGLLGNLSLLSYFAKKRETEAAVVQTLGVISSYIVLTQLAMGEAMPRPQFVATSAVIFVGLLLNF LNYFGKLSAGVWRFWEDFITVGGLSVLPQVMWSTFVPYLPESILPGAISFAIAITAVIMARTGKLSEKGVKIIGGLSGWTATLLFMWMPVAQMWTNFLRP ENIKGLSASSMLLAMIGNGLMIPRSLLIRDLMWFTGSCWASFCYGYGNILCMYCFSAVSKEFFLATTIGLLSWIGISLWRDAVVHGHNSPLSSLGDLVSG S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10009540 [exp]	0	1
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10009609 [exp]	2.4	0.9305
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	2.8	0.9236
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	3.7	0.9294
AT5G23060		CaS	calcium sensing receptor (.1)		Lus10000867 [exp]	4.6	0.9274
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	12.1	0.8747
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	13.4	0.9138
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	17.3	0.9114
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10015059 [exp]	17.7	0.8662
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	19.6	0.9080
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	19.8	0.9047

Compare expression of checked genes

Lus10009540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.