Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64860 437 / 3e-147 SIGB, SIG2, SIG1, RPOD1, SIGA RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) AT1G08540 146 / 4e-37 ATSIG1, SIG1, SIGA, SIG2, SIGB, ABC1, ATSIG2 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) AT2G36990 140 / 4e-35 SIG6, SIGF, ATSIG6, SOLDAT8 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) AT5G13730 132 / 5e-33 SIGD, SIG4 sigma factor 4 (.1) AT5G24120 94 / 6e-20 ATSIG5, SIG5, SIGE SIGMA FACTOR 5, sigma factor E (.1) AT3G53920 93 / 2e-19 SIG3, SIGC SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020365 [exp] 589 / 0 AT1G64860 346 / 7e-115 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Lus10020325 [exp] 164 / 4e-43 AT1G08540 534 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10005668 [exp] 159 / 2e-41 AT1G08540 425 / 2e-143 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10013642 [exp] 131 / 6e-32 AT1G08540 498 / 4e-172 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10001339 [exp] 129 / 3e-31 AT1G08540 520 / 1e-180 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Lus10038823 [exp] 88 / 9e-18 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10014934 [exp] 71 / 1e-13 AT5G24120 250 / 1e-80 SIGMA FACTOR 5, sigma factor E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043300 [exp] 466 / 4e-158 AT1G64860 679 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.013G075400 [exp] 461 / 4e-156 AT1G64860 680 / 0.0 RNApolymerase sigma subunit 2, RNA POLYMERASE SIGMA SUBUNIT 1, sigma factor A (.1.2) Potri.019G044200 [exp] 150 / 2e-38 AT1G08540 588 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.009G057200 [exp] 145 / 1e-37 AT5G13730 303 / 2e-99 sigma factor 4 (.1) Potri.013G070500 [exp] 144 / 3e-36 AT1G08540 558 / 0.0 SIGMA FACTOR B, RNA POLYMERASE SIGMA SUBUNIT 1, SIGMA FACTOR 2, SIGMA FACTOR 1, RNApolymerase sigma subunit 2 (.1) Potri.006G125700 [exp] 130 / 6e-32 AT2G36990 615 / 0.0 SIGMA FACTOR 6, RNApolymerase sigma-subunit F (.1) Potri.006G234400 [exp] 92 / 4e-19 AT3G53920 417 / 5e-140 SIGMA FACTOR 3, RNApolymerase sigma-subunit C (.1) Potri.012G031100 [exp] 85 / 4e-17 AT5G24120 584 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Potri.015G022100 [exp] 74 / 2e-13 AT5G24120 605 / 0.0 SIGMA FACTOR 5, sigma factor E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04545 [flax] [poplar] Sigma70_r4 Sigma-70, region 4 CL0123 [flax] [poplar] HTH PF04542 [flax] [poplar] Sigma70_r2 Sigma-70 region 2 CL0123 [flax] [poplar] HTH PF04539 [flax] [poplar] Sigma70_r3 Sigma-70 region 3
Representative CDS sequence Show only first row Show all	>Lus10009541 pacid=23145738 polypeptide=Lus10009541 locus=Lus10009541.g ID=Lus10009541.BGIv1.0 annot-version=v1.0 ATGTCCACAGCTGCAGTAATTGGACTCACTCCAGGCAAGAGACTCTTGAATTCTTCCTTCTTCCATTGCTCTGATCCTCCTGGAAGTGATCATGGACAGT CATTAGCTCACTCGAGAAGTCTTGTGGTTGCGAGAAGTTCATCATCATCATCGTCGTCGAATTATGGTCATGGATACCATCCCTCGAAGCCAAGCACGCA TTCGGTGAAGGCCCTGAAAGACCATGTAGTGGTGGACACTGCTTCTCTTTCTTCAACATGGTTCGAGGCATTAAATGATTTCGAAGAAGTAGGGAACGAA AAAGAAGGCGAAGGAGGAGAAGGAGAAGAAAGTTTTGATCTTGACATGGAAGCGCTACTCTTGTTGCAGAAGTCTCTACTGGAGAAGCAATGGAACATCA CATTTGACAATGCAGATTCGCCTAAGAGGGGAGTGAAGAAGAAGAAGGAGGTCATAGTTACGAGTTCCGGGATCTCTGCACGGGAACGGAGAGTTAACAG GAAGAGGAAAGGCAATGTCGACGAGGGAAAATCGATAGGGGGATCGAATAATGGTACGTTGGAGACTCATACAGGGTTAACCCCGAATTTGCTGCATAAG CGGGTGGGCCGCGGTTACATGAATGGCGGTGTGGTGAGTGAAGAATACCTCACTCATGCTGAAGTTGTGCACCTCTCGAACATTATTAAAGCCGGTCTCG TGTTGGACGAACGTAAATCCAGGCTGAGAGAAAGATTGGGATGCGATCCCACTGATGAACAGCTGGCGGATTCCATGAAGCTATCTCGATCCGAACTGCA CTCGAGACAGTTTGCTTTCTCTTTGGCTAGGGAGAAGCTGGCGATGAGCAACGTTCGCCTTGTTATGTCCATTGCTCAAAAGTATAACAGAATGGGTGCT AAAATGGGAGACCTTGTTCAGGGTGTCTCGAAAGCTTTTCTTGAGAACACAAGTGCTTTCCCGCTTCCTAATCATCTGCATGGAAGGTTAAGCCTAATAC GGAATGCAAGGATCAGATTAGAACAGGAAGGAATCGATCCAACCATTGATAAAATCGCGCAGATGCTGAATATGTCAGAGAGGAAAGTGAGGAATGCGAT GAAGTGCGGTGTGGTGAGTGAAGAATACCTCACTCATGCTGAAGTTGTGCACCTCTCGAACATTATTAAAGCCGGTCTCGTGTTGGACGAACGTAAATCC AGGCTGAGAGAAAGATTGGGATGCGATCCCACTGATGAACAGCTGGCGGATTCCATGAAGCTATCTCGATCCGAACTGCACTCGAGACAGTTTGCTTTCT CTTTGGCTAGGGAGAAGCTGGCGATGAGCAACGTTCGCCTTGTTATGTCCATTGCTCAAAAGTATAACAGAATGGGTGCTAAAATGGGAGACCTTGTTCA GGGAGGGCTGATCGGGTTGCTGCGTGGAATAGAGAAATACGATTCGTCGAAGGGCTTTAAGATGTCGACCTATGTCTATTGGTGGATTCGCCAGGGTGTC TCGAAAGCTTTTCTTGAGAACACGAGTGCTTTCCCGCTTCCTAATCATCTGCATGGAAGGTTAAGCCTAATACGGAATGCAAGGATCAGATTAGAACAGG AAGGAATCGATCCAACCATTGATAAAATCGCGCAGATGCTGAATATGTCAGAGAGGAAAGTGAGGAATGCTACAGAGGCTGATACCAAGGTCATTTCGCT TGATAGAGAAGCTTACCCGTCTGTGGATGGTGTTCCTGGAGCATCATTTCACCATTACTTTGCAGACGAAAACGTGGAGAACAACCCGTGGCATCGAGTA TACGAATGGGCAGTTAAGGACGAAGTGAATAAACTTATCGATTCGACTCTTCATGCACGAGAACGAGAGATCATACGACTTTACCATGGCATTGGCGGTA AATGCCTTACTTGGGAAGACATCAGTAAACACATAGGGTTGTCAAGAGAAAGAGTGAGGCAAGTTGGGCTAGTGGCATTTGAGAAGCTGAAACTTGCAGC AAGGAGAAAGAAGATGAATGCCCTGCTGTTCAAACAACAGTGA
AA sequence Show only first row Show all	>Lus10009541 pacid=23145738 polypeptide=Lus10009541 locus=Lus10009541.g ID=Lus10009541.BGIv1.0 annot-version=v1.0 MSTAAVIGLTPGKRLLNSSFFHCSDPPGSDHGQSLAHSRSLVVARSSSSSSSSNYGHGYHPSKPSTHSVKALKDHVVVDTASLSSTWFEALNDFEEVGNE KEGEGGEGEESFDLDMEALLLLQKSLLEKQWNITFDNADSPKRGVKKKKEVIVTSSGISARERRVNRKRKGNVDEGKSIGGSNNGTLETHTGLTPNLLHK RVGRGYMNGGVVSEEYLTHAEVVHLSNIIKAGLVLDERKSRLRERLGCDPTDEQLADSMKLSRSELHSRQFAFSLAREKLAMSNVRLVMSIAQKYNRMGA KMGDLVQGVSKAFLENTSAFPLPNHLHGRLSLIRNARIRLEQEGIDPTIDKIAQMLNMSERKVRNAMKCGVVSEEYLTHAEVVHLSNIIKAGLVLDERKS RLRERLGCDPTDEQLADSMKLSRSELHSRQFAFSLAREKLAMSNVRLVMSIAQKYNRMGAKMGDLVQGGLIGLLRGIEKYDSSKGFKMSTYVYWWIRQGV SKAFLENTSAFPLPNHLHGRLSLIRNARIRLEQEGIDPTIDKIAQMLNMSERKVRNATEADTKVISLDREAYPSVDGVPGASFHHYFADENVENNPWHRV YEWAVKDEVNKLIDSTLHAREREIIRLYHGIGGKCLTWEDISKHIGLSRERVRQVGLVAFEKLKLAARRKKMNALLFKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	0	1
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	1.0	0.9531
AT3G59780			Rhodanese/Cell cycle control p...		Lus10027050 [exp]	2.0	0.9437
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003305 [exp]	2.2	0.9415
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	3.7	0.9313
AT1G10660			unknown protein		Lus10029133 [exp]	5.4	0.9119
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	6.9	0.9435
					Lus10005720 [exp]	6.9	0.9428
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	7.1	0.9224
					Lus10030090 [exp]	8.0	0.9387
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	10.4	0.9407

Compare expression of checked genes

Lus10009541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.