Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35980 1023 / 0 YAK1 yeast YAK1-related gene 1 (.1.2) AT2G40120 201 / 4e-55 Protein kinase superfamily protein (.1) AT3G17750 199 / 6e-52 Protein kinase superfamily protein (.1) AT1G73460 195 / 1e-50 Protein kinase superfamily protein (.1) AT1G73450 194 / 2e-50 Protein kinase superfamily protein (.1) AT4G32660 176 / 9e-48 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 172 / 9e-46 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G24740 169 / 4e-45 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G25840 164 / 8e-42 Protein kinase superfamily protein (.1.2) AT3G53640 160 / 1e-40 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020366 [exp] 1700 / 0 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10028283 [exp] 211 / 1e-57 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 210 / 1e-56 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 201 / 1e-52 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 196 / 7e-51 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 195 / 7e-51 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10036878 [exp] 172 / 5e-46 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 169 / 9e-45 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10019458 [exp] 163 / 4e-43 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G075300 [exp] 1194 / 0 AT5G35980 1134 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.019G043400 [exp] 1162 / 0 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.008G069000 [exp] 214 / 3e-58 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 201 / 5e-54 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 196 / 5e-51 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.006G244400 [exp] 184 / 9e-51 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G033400 [exp] 194 / 2e-50 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.015G085700 [exp] 168 / 6e-45 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.006G213400 [exp] 167 / 2e-44 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.012G089700 [exp] 167 / 2e-44 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009542 pacid=23145726 polypeptide=Lus10009542 locus=Lus10009542.g ID=Lus10009542.BGIv1.0 annot-version=v1.0 ATGGATGGGGACAAGGGAGCTGCTGGTGCAGCTCAAGTGCTAAAAGGTGCTCCGACGCCATGGAAGCCTAGGCAGCTGGCTTTCAAACCGTATCAACGTG CTGCTCATCGGCCTCAAACAGAGCGTGTTGTTTTCAAGAGACCTAGTTATGAGCTAGCTAGGTTCAGTGATTCAGTAGGAAAATATGACAAAGGAAAGAG GTGTTCAGCATCCTGCATTGGCTTGCTATGTCTATTAGCAGGCATAAAGCTTTCTGTAGATGATGGTAATCATATGGCATTTTACAAACCACTAGAAACA TATGATTCACTTTCTCCTTTGCTGGCTAGATTGACCAAAGACATAGTTGAAACTTATAAAAAATGCAATCCGCAATTCAAGTATTCGGAAGACTTAAATC CGAAGAGATACTTGACCAGTCCATCAAGTGGAGTTCTCAATGATGGCCATGATAATGTGAACTCGGACCTTATTTTGAGCGTGAATTGCCCATTGCTCAA TCTTGAGGCACAAAGAAGATATATTGTCAAAGATGTCCTTGGGCAGGGAACTTTCGGCCAAGTTGCTAAATGCTGGGTTGTAGAAACTAACAGTTTCGTA GCAGTGAAGATAATTAAAAACCAACCAGCTTATTATCAGCAAGCACTTGTTGAAGTATCTATTTTGACAATGTTAAACAAGAAATATGATCCGGAAGATA AGCATCATATCGTTCGTATTTATGATTACTTTGTACATCACCGGCATCTGTGCATTTGCTTTGAATTGTTAGATACAAACTTGTATGAGCTTATCAAGAT TAATCAGTTTAGGGGACTGTCGTTAAGCATTGTGCAACTATTTTCCAAACAAATCTTACGTGGATTGGCTTTGTTAAAAGATGCTGGTATCATCCACTGT GATCTGAAACCAGAAAATATCCTGTTGTGCACAAGCTTGAAGCCAGCAGAAGTTAAGATAATAGACTTTGGATCAGCCTGCTTGGAGGATCGTACAGTTT ACTCTTATATCCAGAGTCGTTATTACAGGTCCCCCGAAGTTCTTCTTGGCTATCAATATGCTACAGGGATCGATATGTGGTCGTTTGGGTGCATTGTTGC AGAATTGTTTCTGGGGTTGCCACTCTTTCCTGGAGCCTCGGAGTTCGATTTGTTAAGGCGAATGCTTGAAATACTTGGAGGACAACCTCCAGATTATGTG CTGAAGGAGGCAAAGAGCACCAGTAAATTTTTCAAATGCATTGGTAGCGCTTGTAACTTAGAGGGTGTTGAAGCCTCATCAGGTGGCAGAAGTGCTTATC AAGCACTAACAATTGAAGAATATGAAGCAAGAGAACTGAAGAAGCCATCTATCGGGAAGGAGTATTTCAACCGTATGAACCTTGAGGCTATTGTCACAAG CTATCCCTACAGGAAGAACTTAGCTCAAGAAGATATTATGAAAGAGAGTCAGGTACGATTAGCTCTGATTGATTTCTTGAAGGGACTTGTTGAGTTTGAT CCTGCAAAAAGATGGTCACCTTTTCAGGCATCAAAGCATCCGTTTGTTACAGGAGAACCATTCACATGCCCTTATAAGCCTCCTCCTGAGTCTCCACGCC TGCCTGTTGCTCAGACGATTAAGGTGGACCATCATCCCGGTGGAGGGCATTGGTTTGCAGCCGGTCTATCTCCTAATGTTCAAGGCAAGACAAGGCTTCC TTCTCATAACAGCCCACATTTTCCGATGGTTCCATATTCCCATGCTAGTAGTTATGGTAGCGTTGGAAGTCATGGAAGTTATAACGATGCCGTTGGCCTT GGAAATAGCTATGGAAGTTATGGAGACGGCAATAATATGTTGGCGTATTACTCGCCAGTTAATCATTCCGGGATCCACATGCATGCACATCGTGGTCAGC CTATGCTCGGCACTAGCCCCGATGCAAGGCGAAGATATGTCCAGCATCCGCATGGAAATGGGCTTGGTGTTAGCCCCTCGGCAGGGAATTTTGCACCTTT CGCACTTGGTGCAAGCCCATCACAGTTCACTCCTCCAGGCTCCTACAGTCAAATTTCCGCTGGCTCTCCCGGACATTATGGCCCACCTTCCCCTGTGAGG AATAGTTGCCACGGATCGCCCTTGAGTAAAATGACGGCAGCTCCACAATTTAACAGGAAGAAGAACTGGGGGTATTCTGGAAGCACTCAATCTCATGAGA GTTCGTCTTCACATTGGAAGGGACAACATTTTGAGAAACCATGCTCTAACCATGCTGAGGGAGGTACGTCGGTCCACGGTGGTCAACCATCCCATCAGCT TCCGACTTCAGGTTCTGGAAGCTGGGTGAAGAAACAAGGTGGTAATTTTGGTCCGGGTCAATCTTTGGTTCAGAATGTGTCAGGCCCTTTGAAATCTAGT ATCAGTATTCCGTCTTCACAGAGCTCGGGATCAGATCTTGAAAAGCTTGAGGATGACCTGTCGTTGCCAGATCCTGGGGATTGGGATCCCAATTACAGTG ATGAACTTCTTCTGCAAGATGATGATTCTGATGTCAGCTCCCTAAGCGCTGAATTCAGTAAAGGTGTCAATCTTGGTTCGGGCAATCGTTCGGTTACTCA AAGAAGATCCAGCCATCCCACAAATCCTAGCTCGCATTCTTTAATTCAAAGACAAAATGGGTATATGCAATCATTTTCACATGCCAATGTGGGAAGCCCT CCTTCAGCGCACGAACTGCACGCTAGCTATGGCCGTGCAATGTCAAACCCTCCCAATTTCACACCCCATATCTCGCAGAATTCTCCTAGCCGACTCGGAC AACAGGCCATTCCTCGTAATAGCCAAGGAAGACCGCCTTATAGCGGGGACTGGAATCACGTCAAGATCCAGCCTCCACAGTCCAGCTTTAACTCCGGTGG CCTGCTTTCTCCGGGCAGTAGTCCATACAACAATTCCGTTCCCTGGGGGCGCAGGTCGAATTACCCGGGGACGAGCATGCCTCCAACATCTCGAGGAAGG AAAGATAATGGAAGAATTGTGTAG
AA sequence Show only first row Show all	>Lus10009542 pacid=23145726 polypeptide=Lus10009542 locus=Lus10009542.g ID=Lus10009542.BGIv1.0 annot-version=v1.0 MDGDKGAAGAAQVLKGAPTPWKPRQLAFKPYQRAAHRPQTERVVFKRPSYELARFSDSVGKYDKGKRCSASCIGLLCLLAGIKLSVDDGNHMAFYKPLET YDSLSPLLARLTKDIVETYKKCNPQFKYSEDLNPKRYLTSPSSGVLNDGHDNVNSDLILSVNCPLLNLEAQRRYIVKDVLGQGTFGQVAKCWVVETNSFV AVKIIKNQPAYYQQALVEVSILTMLNKKYDPEDKHHIVRIYDYFVHHRHLCICFELLDTNLYELIKINQFRGLSLSIVQLFSKQILRGLALLKDAGIIHC DLKPENILLCTSLKPAEVKIIDFGSACLEDRTVYSYIQSRYYRSPEVLLGYQYATGIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMLEILGGQPPDYV LKEAKSTSKFFKCIGSACNLEGVEASSGGRSAYQALTIEEYEARELKKPSIGKEYFNRMNLEAIVTSYPYRKNLAQEDIMKESQVRLALIDFLKGLVEFD PAKRWSPFQASKHPFVTGEPFTCPYKPPPESPRLPVAQTIKVDHHPGGGHWFAAGLSPNVQGKTRLPSHNSPHFPMVPYSHASSYGSVGSHGSYNDAVGL GNSYGSYGDGNNMLAYYSPVNHSGIHMHAHRGQPMLGTSPDARRRYVQHPHGNGLGVSPSAGNFAPFALGASPSQFTPPGSYSQISAGSPGHYGPPSPVR NSCHGSPLSKMTAAPQFNRKKNWGYSGSTQSHESSSSHWKGQHFEKPCSNHAEGGTSVHGGQPSHQLPTSGSGSWVKKQGGNFGPGQSLVQNVSGPLKSS ISIPSSQSSGSDLEKLEDDLSLPDPGDWDPNYSDELLLQDDDSDVSSLSAEFSKGVNLGSGNRSVTQRRSSHPTNPSSHSLIQRQNGYMQSFSHANVGSP PSAHELHASYGRAMSNPPNFTPHISQNSPSRLGQQAIPRNSQGRPPYSGDWNHVKIQPPQSSFNSGGLLSPGSSPYNNSVPWGRRSNYPGTSMPPTSRGR KDNGRIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	0	1
AT5G61910			DCD (Development and Cell Deat...		Lus10032533 [exp]	1.0	0.8987
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	2.0	0.8373
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	6.9	0.8278
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	7.1	0.8285
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10001831 [exp]	8.0	0.7856
AT2G42490			Copper amine oxidase family pr...		Lus10026696 [exp]	8.9	0.8154
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	9.2	0.8117
AT5G40450			unknown protein		Lus10022266 [exp]	10.8	0.8207
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	14.8	0.7186
AT5G13560			unknown protein		Lus10023462 [exp]	17.1	0.7969

Compare expression of checked genes

Lus10009542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.