Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17910 202 / 2e-55 unknown protein AT1G07330 82 / 5e-16 unknown protein AT2G29620 81 / 1e-15 unknown protein AT5G58880 56 / 8e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020367 [exp] 636 / 0 AT5G17910 250 / 2e-73 unknown protein Lus10001202 [exp] 81 / 2e-15 AT2G29620 144 / 6e-35 unknown protein Lus10005869 [exp] 73 / 3e-13 AT5G58880 144 / 6e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068800 [exp] 264 / 1e-76 AT5G17910 437 / 3e-129 unknown protein Potri.019G044500 [exp] 236 / 4e-67 AT5G17910 296 / 1e-82 unknown protein Potri.001G249000 [exp] 83 / 3e-16 AT5G17910 134 / 2e-31 unknown protein Potri.009G043000 [exp] 77 / 1e-14 AT2G29620 169 / 6e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009543 pacid=23145757 polypeptide=Lus10009543 locus=Lus10009543.g ID=Lus10009543.BGIv1.0 annot-version=v1.0 ATGGTGGTTGTTGATTCGATGAGAATCGCGGTTCACGGGAAGAGATACTCAGTTCTAACGATCAAGATGTGTACAAGATGGATACGGAAGCATCCAGCTA CGGTAGGGTTCCTCTGCATCCTGGTATTCCTCTACAGATCTTTTCCCTTTTGCTTCTCCGTACTGGTTTCGGCTTCTCCGGTTCTGGTATGCACTGCTGT TTTGCTGGGAACTCTTTTGAGCTTCGGCGAATCCTACATTCCTGAGATTGATGAAGTAGTAGTGAGGGGGGATGATGATGACGATAGTGTTGGTTGTGAT GATTTGATGCCTGGGAAGCTTGAGAAAGGATCTGATTATGGTGATGGTGATGTTAAAGTTGATGAGAAGGCTAGGGAAATTCAGTTTGCTGAGCAAGTGG AGAAAGTGTTCACTGAGCTTGAGATGAAGTTGAGGAAAAGAGAGGAGAGTGAGAAGAAAGCTGTAGTAAGTAAGAATGATGATGATGATGGTGATGGAGT TGGTAGTAGTAGTAAGTATTTCGAGATTCGAGATTCTAGAGATGACGGTGGCAGTAATGGTGGCGGATTGGAGTCGGATGGAGATGGAATTAAGTCGGCG AGGGACTTTCTGGCTGCTCGAACGGCCGAATGTGGGGGTAATGAAGAGGAGGAGGAAGAGGAAGAAGAAGAGGAAGAGGAAGAGGAGGGAGATTCGGATG ATTCAGGGTCAGATAGGGCGGAGAGTTCGTCTCCAGATGCTTCGATGGCAGATATTATGCCGATTCTCGATGAGCTTCATCCACTTTTGGACGAAGAAGC TCCTCAGCAGCAAGGAGGGCTTATTTCTCATTATGGATCTGCTTCTGAAGGGTCGCATCATAATCGAGGTAGCAGTGATGATGATGATGATGGTGATGAT TATTCGGAGGAAGATGAAGTTAAGCACGAGGATAACGATGAAGATGAAGATGAAGAGGAAGAGAGTGAAGGGGCGCAGACCGGTAAAGAGGACGAGAGCA AATCGGCGATTAAGTGGACGGAGGATGATCAGAAGAATCTAATGGACTTGGGGACTTCAGAGCTAGAAAGGAACCAGAGGCTGGAGAGTCTTATAGCTAG GAGAAGGGCTCGGAGGAGTTCGAGAACTTTGATTGCGAAAGAGAGGAACTTGATAGATTTCGATGGTGATCTTCACTTCAATGTGCCACCCATTTCGACA GCTAGGCGAAACAACAACCCGTTCGATCTCCCTTACGACGATGATGCTCCTGGATCCGCCCCTTCATCCATGATGTTCCTGAGGAAGCGGAACCCTTTCG ATTTGCCATACGATTCCGGCGAGGAAAAGCCTGATCTTAAAGGTGGTGACAGCTCTGATCCCGAGTTTCCGGCATCATTTCAGCATGGTAATAGAGAGCC GGTGGTGCCGGTGTTTCGGAGACACGAGAGTTTCAATGTCGGTCCGTCGTCTCTTGGAGCTCCTCATAGGCAAGAAAGGCAGCAGGATCTTCGGTGGAAG CCTTATTTCGTGCCGGAACGGTTTGCTAACGAACCGGTTTTCCATAGGCAGTTGAGTGAGATCAGCGAGTCGAAGATGAGCTCGATTGCGGATAATGAAT CGGTGGTTTCGAAACATGATGATGATCATCATCATCACGAGACAGAATCATCGGAGTGGATGTGA
AA sequence Show only first row Show all	>Lus10009543 pacid=23145757 polypeptide=Lus10009543 locus=Lus10009543.g ID=Lus10009543.BGIv1.0 annot-version=v1.0 MVVVDSMRIAVHGKRYSVLTIKMCTRWIRKHPATVGFLCILVFLYRSFPFCFSVLVSASPVLVCTAVLLGTLLSFGESYIPEIDEVVVRGDDDDDSVGCD DLMPGKLEKGSDYGDGDVKVDEKAREIQFAEQVEKVFTELEMKLRKREESEKKAVVSKNDDDDGDGVGSSSKYFEIRDSRDDGGSNGGGLESDGDGIKSA RDFLAARTAECGGNEEEEEEEEEEEEEEEGDSDDSGSDRAESSSPDASMADIMPILDELHPLLDEEAPQQQGGLISHYGSASEGSHHNRGSSDDDDDGDD YSEEDEVKHEDNDEDEDEEEESEGAQTGKEDESKSAIKWTEDDQKNLMDLGTSELERNQRLESLIARRRARRSSRTLIAKERNLIDFDGDLHFNVPPIST ARRNNNPFDLPYDDDAPGSAPSSMMFLRKRNPFDLPYDSGEEKPDLKGGDSSDPEFPASFQHGNREPVVPVFRRHESFNVGPSSLGAPHRQERQQDLRWK PYFVPERFANEPVFHRQLSEISESKMSSIADNESVVSKHDDDHHHHETESSEWM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29620			unknown protein		Lus10009543 [exp]	0	1
AT5G17910			unknown protein		Lus10020367 [exp]	1.0	0.9772
AT5G17910			unknown protein		Lus10009544 [exp]	2.0	0.9256
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	3.7	0.9184
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	4.9	0.9179
AT1G31780			unknown protein		Lus10037281 [exp]	7.3	0.9234
AT3G63460		EMB2221	transducin family protein / WD...		Lus10016373 [exp]	10.7	0.9215
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	11.4	0.9154
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	12.2	0.9225
AT5G52882			P-loop containing nucleoside t...		Lus10027550 [exp]	12.7	0.8608
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	13.0	0.8907

Compare expression of checked genes

Lus10009543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.