Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020368 [exp] 1260 / 0 ND 43 / 0.001
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G068800 [exp] 172 / 3e-43 AT5G17910 437 / 3e-129 unknown protein Potri.019G044500 [exp] 83 / 8e-16 AT5G17910 296 / 1e-82 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009544 pacid=23145746 polypeptide=Lus10009544 locus=Lus10009544.g ID=Lus10009544.BGIv1.0 annot-version=v1.0 ATGGAAAACAACCACGACACCGATTCTTGCTTGTCACCTTCGGGCAGTATAGTTCCTGTTCATATCAACACAAGCGAAATCCTCTTGCGGATGGGACGTG GTGAAGAAGAATACAGCAGTATGTCGAGCTTGTCATCTCCCGACGAAAAGGCATCCACTGCGCAGAAGGTTCGGAATGGTGCTGCAAGCGTTTCGACAGA CGCTTCAGATCATCATCATCCTACAGGTTCAACAGTAGATGATCAGAGTAACCACGAGGAGCCGGTTTTTGATTCGAGTCCGCCTTCGCTGGACAAATTC CTGTCCTTTAACTCGATCTCCTCTGAAATTCAAGCAGAGATATCGGAGTTTGCTTCACTCTCGGCATTGCCTCAACGTGTAGCGGCACATCAGGTTGCTA CATCACAGGCCGGTGACCAGCAAGTGCACTGGTCAGAGAAGTCTATGGTCGGACCATCTTTTAACAATCATGAACAGACGGAACCTACTGTGCAGAATGT AGAGCCTGTGCCCATGGTGAGCACGAGCGGTGCAAGTCCAACTGAAGCATTTTGGTCACCGGAGTCTGCAGACAGTTACAACTTTGAGGAAGACGTATCG AAAGAGATAGATGAAGGAATCCTATCGGAATTAGACACGGTCGGGGATTTCAGAGTCAAAGAAGTCAATGGCGAACAGAATGTTGAGTCAGTACCGTCGG AGCTTCCGGCTCTTGAAGTTAGAACGGCTGAGGATATTGACTTGGCATTCAAGCAACTGCACGAAGGAGCCGAACTTGACGAAATTATCCTTCCCAGCAC AATTAAGCTGCAACAGTCAGCTGAGGACGGCAAATTCCGAAGTCCTGATGCTCAACCCTCCACTCCGTTGCAAGTTATCGATGCGAGGTTTCTAGAAGAT ATCGATTTTACGGTGATGCAGCGAGCTTCCAAGGGTAACCGAGTAACCGAGGAGGAGGTTTCGATGAAGGAGCTTCCGGTTCTTGAAGTTAGAACAGCTG AAGATATTGACTTGGCCTTCAAGCAACTTCACGAAGGAGTGGAACTCGAGGAGGTCATCGTTCCGAGCATGATTAAGCAACAATCGATCGAAGAAAGATT TGAAAGTCCCGATGCACAGCCTTCCACGCCCTTACAAGTTATCGAAGCACGGTTTCCGGAAGATATTCATGTTGCCTTTATGCAACAAGCAGGACCACAA ACCGACGAAGGCATTTCGAGAAAGGATCTTCCGGTTCTTGAAGTGAGAACGGCGGAGGATATTGACATGGCTTTCAAACAGCTACACGAAGGAGCGGAAA TCGAGGAGGTGATCCTTCCCAGTAAGATCAAGCAGCAGTCGATTGAAGACGAATTCGGAAGTCCCGAGGCGCAACCTTCTACGCCGTTGCACGTTGTTGA AGCAAGGTTTCTAGAAGATATTGATTTTTCTGTGATGCAACAAGCTTTGAAGGCTGGCAGTGACGAGAAGATTTCTGAAAATGAGCTGCCGCTTCTTGAA GTAAGAACAGCGGAAGACATTGACTTGGCATTCAAGCAACTTCACGAAGGAGTGGAAATCGAGGAGGTCATCGTTCCGAGCATGATTAAGCAACAATCGA TCGAAGAAAGATTTGAAAGTCCCGATGCACAGCCTTCCACGCCCTTACAAGTTATCGAAGCACGGTTTCCGGAAGATATTCATGTTGCCTTTATGCAACA AGCAGGACCACAAACCGACGAAGGCATTTCGAGAAAGGATCTTCCGGTTCTTGAAGTGAGAACGGCGGAGGATATTGACATGGCTTTCAAACAGCTACAC GAAGGAGCGGAAATCGAGGAGGTGATCCTTCCCAGTAAGATCAAGCAGCAGTCGATTGAAGACGAATTCGGAAGTCCCGAGGCGCAACCTTCTACGCCGT TGCACGTTGTTGAAGCAAGGTTTCTAGAAGATATTGATTTTTCTGTGATGCAACAAGCTTTGAAGGCTGGCAGTGACGAGAAGATTTCTGAAAATGAGCT GCCGCTTCTTGAAGTAAGAACAGCGGAAGACATTGACTTGGCATTCAAGCAACTTCACGAAGGAGTGGAAATCGAGGAGGTCATCCTTCCGAGCACGATC AAGGATCAGCTTTCGGCCGAAGATGAATTCGGAAGTCCCCGCGAGCAACCTTCTACACCGATGCAAGTTCTTCAAGTTCGAACAGCGGAAGACATCGACG TAGCATTCAAGCAACTTCAGGAAGGAGCTAAACTCGAGGAGGTCATCCTCCCTAGCACAATTAAGCAGAAATCGCTTGAAGAAGACGAGTTTCGAAGTCC GAGGGAGCAGCCTTCTACTCCGTTGCAAGTCGTCGAAGCCAAACGTATAGACGAGATTCATTTCGCTGTCCTCGAACTTGCTTCAAAGGGCGGAAGCGTT CCGCAACAGAAAATATCTGAATTGGAGCTTCCTGTTCTTGAAGTTCGAACAGCAGAAGACATTGACTTGGCCTTCAAGCAACTTCACGAAGGAGCTAAAC TCGAAGATGTCATCCTTCCCAGCACAATTAAGCAGCAACCGCTCGAAGAAGACGAGTTTAGAAGTCCGCGCGACCAGCCATCCACTCTGTTTCAAGTCGT TGATGCCAAACGTATAGACGATATTCATCTCGCTAAGGCAGCCCCTGACCGAAACCTCCCAGGATCATCCGAAAATGAGCTTCCATTTCTCGAAGTCAAA ACAGCGGAAGACATTGACTTGGCCTTCAAGCAACTCCACGAAGGAGCAGAAGTCAATGAGGTTATCCTTCCCAGCACGATCAAGCAACGACAGCCTATCG AAGACGAGTTCGGAAGTCCTAGCGAACAACCATCTACACCTTTGCAAGTTGTCGACGCGAGATTCATAGAAGACATCCAGGTTGCATTGCTGCAACAAAC AACAGAGAATAACACCGATTCGAGGAACGTGCTCCCGGTTCTCGAGGTTAGAACAGCCGAGGACATTGACTTGGCGTTCAAGCAACTCCATGAAGGAGCA GAAGTCAACGAGGTCATCGTTCCCAGTCACATAAAGCAGCGGTCACTGGCTGAAGAAGAAGAGTTCTTTAAGAGTCCCGATGAACAACCCTCTACTCCGT TGCAAGTCGTCGATGCGAGATTCGTGGAAGATATCAAAACTGCCGTCATGCAACATGCTTCTTCCAAAGGTAATCCATCTGCTTCTGCGTAG
AA sequence Show only first row Show all	>Lus10009544 pacid=23145746 polypeptide=Lus10009544 locus=Lus10009544.g ID=Lus10009544.BGIv1.0 annot-version=v1.0 MENNHDTDSCLSPSGSIVPVHINTSEILLRMGRGEEEYSSMSSLSSPDEKASTAQKVRNGAASVSTDASDHHHPTGSTVDDQSNHEEPVFDSSPPSLDKF LSFNSISSEIQAEISEFASLSALPQRVAAHQVATSQAGDQQVHWSEKSMVGPSFNNHEQTEPTVQNVEPVPMVSTSGASPTEAFWSPESADSYNFEEDVS KEIDEGILSELDTVGDFRVKEVNGEQNVESVPSELPALEVRTAEDIDLAFKQLHEGAELDEIILPSTIKLQQSAEDGKFRSPDAQPSTPLQVIDARFLED IDFTVMQRASKGNRVTEEEVSMKELPVLEVRTAEDIDLAFKQLHEGVELEEVIVPSMIKQQSIEERFESPDAQPSTPLQVIEARFPEDIHVAFMQQAGPQ TDEGISRKDLPVLEVRTAEDIDMAFKQLHEGAEIEEVILPSKIKQQSIEDEFGSPEAQPSTPLHVVEARFLEDIDFSVMQQALKAGSDEKISENELPLLE VRTAEDIDLAFKQLHEGVEIEEVIVPSMIKQQSIEERFESPDAQPSTPLQVIEARFPEDIHVAFMQQAGPQTDEGISRKDLPVLEVRTAEDIDMAFKQLH EGAEIEEVILPSKIKQQSIEDEFGSPEAQPSTPLHVVEARFLEDIDFSVMQQALKAGSDEKISENELPLLEVRTAEDIDLAFKQLHEGVEIEEVILPSTI KDQLSAEDEFGSPREQPSTPMQVLQVRTAEDIDVAFKQLQEGAKLEEVILPSTIKQKSLEEDEFRSPREQPSTPLQVVEAKRIDEIHFAVLELASKGGSV PQQKISELELPVLEVRTAEDIDLAFKQLHEGAKLEDVILPSTIKQQPLEEDEFRSPRDQPSTLFQVVDAKRIDDIHLAKAAPDRNLPGSSENELPFLEVK TAEDIDLAFKQLHEGAEVNEVILPSTIKQRQPIEDEFGSPSEQPSTPLQVVDARFIEDIQVALLQQTTENNTDSRNVLPVLEVRTAEDIDLAFKQLHEGA EVNEVIVPSHIKQRSLAEEEEFFKSPDEQPSTPLQVVDARFVEDIKTAVMQHASSKGNPSASA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17910			unknown protein		Lus10009544 [exp]	0	1
AT5G17910			unknown protein		Lus10020367 [exp]	1.4	0.9298
					Lus10020368 [exp]	1.7	0.9110
AT2G29620			unknown protein		Lus10009543 [exp]	2.0	0.9256
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	4.0	0.9041
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	4.6	0.8768
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	5.0	0.8890
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	6.0	0.8779
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	6.9	0.8420
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	8.4	0.8597
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	9.4	0.8645

Compare expression of checked genes

Lus10009544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.