Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31080 411 / 3e-142 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) AT2G24330 372 / 7e-127 Protein of unknown function (DUF2296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009547 [exp] 754 / 0 AT4G31080 457 / 2e-160 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) Lus10020370 [exp] 719 / 0 AT4G31080 451 / 1e-157 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281200 [exp] 424 / 3e-147 AT4G31080 397 / 1e-136 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) Potri.006G281400 [exp] 422 / 7e-147 AT4G31080 399 / 2e-137 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF10058 [flax] [poplar] zinc_ribbon_10 Predicted integral membrane zinc-ribbon metal-binding protein
Representative CDS sequence Show only first row Show all	>Lus10009546 pacid=23145758 polypeptide=Lus10009546 locus=Lus10009546.g ID=Lus10009546.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGAAGACGAGCAGCAGCAGCGCGGCGGAGAGTGAATCCAAGGAGGCGACGACGAACAACGCTTCCGTTGTGAACAAGAAGAAGCGGAAGG GGTTTATGGCTAGGGTTTGGAATTCCGTTTTTAAACACGGCGGCGATGATTTCGAGAAGCGGCTACAATACATTTCTAGAGAGGAAGCTTCTGTGTTGAC TAGGATGAAGAAGCGATCCATCACTTGGCGGAGGATGACCAGGAACCTTATTGCCTTCTCTGTTCTCTTGGAGATAGTTGCAGTGGGCTACGCTATCGTT ACAACTAGAGCTGACGATTTGGATTGGAAGATGAGAGCATTTCGTGTTTTGCCGATGTTTCTATTGCCAGCATTCAGCTCGGTTGCTTACTCCGGTCTTG TGAACTTCACAAAGATGTGCGATCGCAGGGACGAGAAAACACTGGAGAGGCTTCGAGCTGAAAGACAACAAAAAATTGATGAGCTGAAAGAGAAGACAAA TTATTACACCACGCAGCAACTCATTCAGAGATATGATCCCGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTCCTGGCATCAAAGTTAGGTGCAGACACA GGATTAAAGATGTACCTCGGCGACGAATCAGGATTCACTGAATCCTCAGCGAAAAGTAACGACGCAGAGTTTGTCCAAGCTAGTGGAGTCCGAAACAGAA AGCAAGGACAAGCCCGATCCAGAAGTGCAGGGAGCACTCCCGTGCACCCTTCCAACGACGGCACTCCGCGATCAATCCTAAGCGAAGGCCCCCTCTCCGA GCATGACGAGCAGCTCGTCGTCGAGCATCACAACCCCCAGGCAGCTCCTGTGAGCGACGGAGGATGGATTGCCCGATTAGCCGCGTTATTAGTCGGCGAA GATCCCGCTCACTCTTACGCACTCATTTGCCTCGCTAGGAAAGAGGATTTCCCATTCATAACTTATTACTGCCCGCACTGTCACGCCCTCAATCAGCCGA AAAATTCAGCTTCGGTTTCGGGAGTCAGCACCCCTCCGAGTCTGAACCAGTCGAAACTGGGGAACATCGCTACAGTCAACGAGGAGGAGGACATCAGCGA CGCTCCTGTCGATTCCCCTACCGACAGCGTGGCTACGAGCAACAGCCTCGCTCAACCGAGTTCCGAAGCTCAGGAACAAGCCGGAAAGGCAGCATCGGTC GAATCGGCTAGCTGA
AA sequence Show only first row Show all	>Lus10009546 pacid=23145758 polypeptide=Lus10009546 locus=Lus10009546.g ID=Lus10009546.BGIv1.0 annot-version=v1.0 MAEEKTSSSSAAESESKEATTNNASVVNKKKRKGFMARVWNSVFKHGGDDFEKRLQYISREEASVLTRMKKRSITWRRMTRNLIAFSVLLEIVAVGYAIV TTRADDLDWKMRAFRVLPMFLLPAFSSVAYSGLVNFTKMCDRRDEKTLERLRAERQQKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADT GLKMYLGDESGFTESSAKSNDAEFVQASGVRNRKQGQARSRSAGSTPVHPSNDGTPRSILSEGPLSEHDEQLVVEHHNPQAAPVSDGGWIARLAALLVGE DPAHSYALICLARKEDFPFITYYCPHCHALNQPKNSASVSGVSTPPSLNQSKLGNIATVNEEEDISDAPVDSPTDSVATSNSLAQPSSEAQEQAGKAASV ESAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	0	1
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	1.0	0.8838
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	3.2	0.8258
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	3.9	0.8458
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	4.0	0.8087
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	5.3	0.8352
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	5.3	0.8208
AT1G77610			EamA-like transporter family p...		Lus10029663 [exp]	5.8	0.8466
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	6.3	0.7602
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10038043 [exp]	6.9	0.7763
AT1G04200			unknown protein		Lus10039377 [exp]	7.3	0.8228

Compare expression of checked genes

Lus10009546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.