Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31080 434 / 3e-151 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) AT2G24330 398 / 5e-137 Protein of unknown function (DUF2296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009546 [exp] 755 / 0 AT4G31080 434 / 3e-151 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) Lus10020370 [exp] 752 / 0 AT4G31080 451 / 1e-157 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G281200 [exp] 453 / 1e-158 AT4G31080 397 / 1e-136 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2) Potri.006G281400 [exp] 452 / 3e-158 AT4G31080 399 / 2e-137 Protein of unknown function (DUF2296) (.1), Protein of unknown function (DUF2296) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF10058 [flax] [poplar] zinc_ribbon_10 Predicted integral membrane zinc-ribbon metal-binding protein
Representative CDS sequence Show only first row Show all	>Lus10009547 pacid=23145689 polypeptide=Lus10009547 locus=Lus10009547.g ID=Lus10009547.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAGAAGACGAGCAGCAGCAGCGCGGCGGAGAGTGAATCCAAGGAGGCGACGACGAACAACGCTTCCGTTGTGAACAAGAAGAAGCGGAAGG GGTTTATGGCTAGGGTTTGGAATTCCGTTTTTAAACACGGCGGCGATGATTTCGAGAAGCGGCTACAATACATTTCTAGAGAGGAAGCTTCTGTGTTGAC TAGGATGAAGAAGCGATCCATCACTTGGCGGAGGATGACCAGGAACCTTATTGCCTTCTCTGTTCTCTTGGAGATAGTTGCAGTGGGCTACGCTATCGTT ACAACTAGAGCTGACGATTTGGATTGGAAGATGAGAGCATTTCGTGTTTTGCCGATGTTTCTATTGCCAGCATTCAGCTCGGTTGCTTACTCCGGTCTTG TGAACTTCACAAAGATGTGCGATCGCAGGGACGAGAAAACTCTGGAGAGGCTTCGAACTGAAAGGCAACAAAAAATTGATGAGCTGAAAGAGAAGACAAA TTATTACACCACTCAGCAACTCATTCAGAGATATGATCCCGACCCAGCAGCAAAGGCGGCTGCTGCCACTGTCCTGGCATCAAAGTTAGGTGCAGACACA GGATTGAAGATGTACCTCGGAGATGAATCGGGATTCACCGAGTCCACAGCAAAGAGTAACGATGCAGAGTTTGTCCAAGCAAGTGGACTCCGAAACAGAA AGCAAGGTCAAGCCAGATCCAGAAGTGCAGGGAGCACTCCCGTGCACCCTTCCAACGACGGCACTCCGCGATCAATCCTAAGCGAAGGCCCCCTCTCCGA GCACGACGAGCAGCTCGTCGTCGAGCATCACAACCCCCAGTCAGCTCCTGTAAGCGACGGAGGATGGATTGCCCGATTAGCGGCTTTACTAGTAGGTGAA GACCCCGCCCACTCTTACGCACTCATTTGCGGCAACTGCCATATGCACAACGGCCTCGCTAGGAAAGAGGATTTCCCATTCATAACTTATTACTGCCCGC ACTGTCACGCCCTCAATCAGCCGAAAAATTCAGCTTCGGTTTCGGGAGTCAGCACCCCTCCGAGTCTGAACCAGTCGAAACTGGGGAACATCGCTACAGT CAACGAGGAGGAGGACATCAGCGACGCTCCTGTCGATTCCCCTACCGACAGCGTGGCTACGAGCAACAGCCTCGCTCAACCGAGTTCCGAAGCTCAGGAA CAAGCCGGAAAGGCAGCATCGGTCGAATCGGCTAGCTGA
AA sequence Show only first row Show all	>Lus10009547 pacid=23145689 polypeptide=Lus10009547 locus=Lus10009547.g ID=Lus10009547.BGIv1.0 annot-version=v1.0 MAEEKTSSSSAAESESKEATTNNASVVNKKKRKGFMARVWNSVFKHGGDDFEKRLQYISREEASVLTRMKKRSITWRRMTRNLIAFSVLLEIVAVGYAIV TTRADDLDWKMRAFRVLPMFLLPAFSSVAYSGLVNFTKMCDRRDEKTLERLRTERQQKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADT GLKMYLGDESGFTESTAKSNDAEFVQASGLRNRKQGQARSRSAGSTPVHPSNDGTPRSILSEGPLSEHDEQLVVEHHNPQSAPVSDGGWIARLAALLVGE DPAHSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNQPKNSASVSGVSTPPSLNQSKLGNIATVNEEEDISDAPVDSPTDSVATSNSLAQPSSEAQE QAGKAASVESAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	0	1
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	1.4	0.8658
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	2.8	0.8463
AT3G52240			unknown protein		Lus10043425 [exp]	3.0	0.8267
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	3.9	0.8033
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	3.9	0.8494
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	5.0	0.8386
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	5.1	0.8129
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	5.3	0.8352
AT3G03210			unknown protein		Lus10020802 [exp]	5.9	0.7688
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	6.5	0.8371

Compare expression of checked genes

Lus10009547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.