Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26680 535 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 206 / 2e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G02150 194 / 4e-54 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 192 / 1e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09820 191 / 1e-53 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 192 / 2e-53 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 193 / 7e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 182 / 1e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 182 / 3e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 174 / 1e-47 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020371 [exp] 458 / 4e-160 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027916 [exp] 211 / 4e-60 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 207 / 8e-59 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 207 / 1e-57 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 183 / 1e-50 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032174 [exp] 182 / 2e-50 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 182 / 3e-50 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10013077 [exp] 179 / 3e-49 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 171 / 5e-47 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166001 [exp] 567 / 0 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G105600 [exp] 209 / 2e-59 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 195 / 3e-54 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 191 / 8e-54 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G071600 [exp] 187 / 2e-52 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131400 [exp] 184 / 3e-51 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G108600 [exp] 182 / 9e-51 AT5G38730 762 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 186 / 1e-50 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 186 / 2e-50 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 181 / 3e-50 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009548 pacid=23145702 polypeptide=Lus10009548 locus=Lus10009548.g ID=Lus10009548.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGAACTCTACGCTCCGCCACTAGGAATCTGAATCAAATTCCGATCCCCCATGGGTCGATTCCTGAACCTAGAGGTCAGGACCTTGATTTCA TCAATGTAGCTCACAGCCACCTGATTCATTCCGATTGGGGGAAGCTCGCTTCTTTATCGCCGCATCTGACACCATTCAGAGTTAAGCACGTCCAGCTGAA GATCCAGAGAGACTTCGTATTATCGCTCGAGTTCTTCAATTGGGTGAAAGCTCACAACCCAGCTGCCCACACGCTGGAAACACATTCAATCATCCTCCAC GTCTTGACGAAGAATCGTAAATTCAAGTCGGCCGAGTCCATCACGAAGGAAGTTTTGAAATTTGGTGGTGGTTCTTCAGTGCGCTTTGCAGACCAGCTGT TCGACGTATTGCTCCACTCATACCGGGTATGCGATTCTTCTGTTCGTGTGTTTGATTCCCTGTTTAGCACTTGTGCTCGTTTGAAGAAGTTCAGATTCGC TACCGATGTGTTCAATCGGATGAAGGAGTATGGATTCCTGCCGAATGTCGATTCCTGCAACGCTTATTTGAGCTCCTTGCTCGACATGAACAGAGTTGAT ATCGCGTTTTTATTCTACGGAGAGATGCAGAGGTGTAGGATATCTCCCAATGTGTATACTATGAACATGGTTATGTCCGCCTTGTGTAAAGCCGGTCGGC TCGAGAAAGCGGTTGAGCTTTTTCGAGATATGGAGAACGTCGGGGTTGGTCCGGATGTTTCGTCGTACAATGTTCTGATTGCAGGGTATTGCAGGAAGGG GCTTTTGAGCTCGGCGATGAAGCTGAAAAGCTCGATGGAGAAGAACGGTACGGTACCGAATGTGGTTACTTACAACACTCTGATCCATGGTTTCTGTAAA GAAGGGAGATTTCAGGAATCGCGTAAGCTACTCAACGAGATGATAAAACTCGGAAATGTAGCTCCGAATGTCGTGACTTTTAACACGATGATGAACTCAG GGGGCAGCTGCGAGATGAACGATACGCTATATAAGGAGATGTTGAGTTTCGGGATCAAACCCGACATAGTGACGTACAATGCGTTGATTGGTGGATTGTG CAGGGAAGGGAAGACTAAGAGAGCTGCACATTTGGCTAAGGAGCTTGTGGATAAGTGGAAGATGGCTCCGAATGCTTCGACTTTTGCGGCGCTGATCACA GGGCAGTGTGTTAGGTACGATCCGGACCGGGGGTTCGAGGTGTATAAGGAGATGGTGAGGCGCGGGTTTTGTCCCAATAGGGAGACGTTGGATGTTCTGG TGGGCGGGTTCTGTAAGAAGAAGGATTTCGAAGGAGCGGGGCGAGTGTTGTTGAAAATGTTTGAGAATTGTGCAACTCCTGCTTCGGAGTTCATAGTGGA TACTTACAATGGACTTAGGGAGTTTGGGATGGATCATCTGGCTGCGGAGCTGTGGAGTGCAGTCGACGCTAGGAAACTTGGGATCGTCGAGCTCGGAGCA TCTGACGATTGA
AA sequence Show only first row Show all	>Lus10009548 pacid=23145702 polypeptide=Lus10009548 locus=Lus10009548.g ID=Lus10009548.BGIv1.0 annot-version=v1.0 MAARTLRSATRNLNQIPIPHGSIPEPRGQDLDFINVAHSHLIHSDWGKLASLSPHLTPFRVKHVQLKIQRDFVLSLEFFNWVKAHNPAAHTLETHSIILH VLTKNRKFKSAESITKEVLKFGGGSSVRFADQLFDVLLHSYRVCDSSVRVFDSLFSTCARLKKFRFATDVFNRMKEYGFLPNVDSCNAYLSSLLDMNRVD IAFLFYGEMQRCRISPNVYTMNMVMSALCKAGRLEKAVELFRDMENVGVGPDVSSYNVLIAGYCRKGLLSSAMKLKSSMEKNGTVPNVVTYNTLIHGFCK EGRFQESRKLLNEMIKLGNVAPNVVTFNTMMNSGGSCEMNDTLYKEMLSFGIKPDIVTYNALIGGLCREGKTKRAAHLAKELVDKWKMAPNASTFAALIT GQCVRYDPDRGFEVYKEMVRRGFCPNRETLDVLVGGFCKKKDFEGAGRVLLKMFENCATPASEFIVDTYNGLREFGMDHLAAELWSAVDARKLGIVELGA SDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	0	1
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	1.4	0.8726
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	2.8	0.8705
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	3.2	0.8606
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	3.5	0.8680
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	5.7	0.8622
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10013191 [exp]	6.9	0.8600
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	8.1	0.8355
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10031661 [exp]	8.7	0.8300
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	8.8	0.8574
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	9.0	0.8452

Compare expression of checked genes

Lus10009548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.