Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23910 163 / 1e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G30470 161 / 7e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14700 114 / 1e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 107 / 4e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 96 / 7e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 94 / 8e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 90 / 1e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 89 / 3e-20 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT4G27250 89 / 4e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 87 / 5e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020372 [exp] 417 / 1e-148 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006885 [exp] 165 / 2e-49 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003780 [exp] 159 / 8e-47 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022239 [exp] 117 / 1e-30 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 105 / 2e-26 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 102 / 2e-24 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10009955 [exp] 93 / 8e-22 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 91 / 4e-21 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 92 / 8e-21 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079500 [exp] 275 / 2e-92 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 254 / 3e-84 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 254 / 3e-84 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G100500 [exp] 184 / 5e-57 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G178700 [exp] 182 / 3e-56 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G349600 [exp] 119 / 2e-31 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 107 / 3e-27 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 100 / 1e-24 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 92 / 2e-21 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045500 [exp] 88 / 7e-20 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10009549 pacid=23145751 polypeptide=Lus10009549 locus=Lus10009549.g ID=Lus10009549.BGIv1.0 annot-version=v1.0 ATGGCTTACTGCGGCGAAAACGATCGCGATCAAGTTGAAGATCAAGATCATGCTCAGACCGTCTGTGTCATGGACGCATCCGGCCGATTAGGCTCCGCTC TCGTCCACAGCCTCCTCCTCCGCGGATACTCCGTCCACGCCGCCGTCCAGCTCCACGGGAAATTGGAAGGATCGTTCAGTAATATTGACAGCAGTTCGAG GTTGAGAGTGTTCGAGATGGACATGTTCGACTACCACGCGATGATGGAAGCTTTAAGAGGATGCGTCGCCTTGTTCTACTCCTTCGAGCCTCCTTCCGAT CATCCTAATTACGATGAATCGATGGCGGAGGTGGAGGTGATGGCGGCGCACAACGCGCTGGAAGCATGTGCTCAGACTCCGACGGTGCATAAAGTTGTGT TCACTTCGTCGGCAACTGCTGTAGTCTGGAAAGAGGATCGATCGCCGTCGACGGCGGCGGCGGGGGGGGGGTTGTGGCATGCACTCTCCAAGACACTCTC GGAGAAGGTGGCGTGGGCGCTAGCGATGGACCGTGACATCAACATGGTGGCCGTCAACGGCGGGGTCCTCCTGACCTCCGACAATCACCAGCTCAGCCTC GCCAACCCATACCTGAAAGGAGCCGCCGAGATGTACGACGACGGGGTCTTAGTCACCGTGGACCTCGACTTTCTAGTCGAGGCTCACGTTCGCGTCTCCG ACGACTCCTCCTCTCCTTCTCGCCGGAGGTGGCGGAGGATTACTCCGGTCGGGTGGTGGAGGAGGAGAGGGAGGTTGAGCAGAGGATTAGTAACAAGAAG CTTTGTGAGCATATGGTGA
AA sequence Show only first row Show all	>Lus10009549 pacid=23145751 polypeptide=Lus10009549 locus=Lus10009549.g ID=Lus10009549.BGIv1.0 annot-version=v1.0 MAYCGENDRDQVEDQDHAQTVCVMDASGRLGSALVHSLLLRGYSVHAAVQLHGKLEGSFSNIDSSSRLRVFEMDMFDYHAMMEALRGCVALFYSFEPPSD HPNYDESMAEVEVMAAHNALEACAQTPTVHKVVFTSSATAVVWKEDRSPSTAAAGGGLWHALSKTLSEKVAWALAMDRDINMVAVNGGVLLTSDNHQLSL ANPYLKGAAEMYDDGVLVTVDLDFLVEAHVRVSDDSSSPSRRRWRRITPVGWWRRRGRLSRGLVTRSFVSIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10009549 [exp]	0	1
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10012549 [exp]	1.4	0.7216
AT1G34630			unknown protein		Lus10043395 [exp]	3.0	0.7418
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	23.2	0.6315
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	27.6	0.6287
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	37.1	0.5762
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	39.2	0.5948
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10043320 [exp]	52.0	0.5553
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019719 [exp]	61.0	0.5779
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002995 [exp]	95.3	0.5373
AT5G03795			Exostosin family protein (.1)		Lus10013790 [exp]	96.0	0.5398

Compare expression of checked genes

Lus10009549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.