Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16730 478 / 1e-152 Plant protein of unknown function (DUF827) (.1) AT2G24360 436 / 7e-143 Protein kinase superfamily protein (.1) AT3G02930 442 / 1e-139 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT4G31170 420 / 3e-138 Protein kinase superfamily protein (.1.2.3.4) AT1G65010 391 / 6e-116 Plant protein of unknown function (DUF827) (.1) AT4G27595 358 / 4e-105 Plant protein of unknown function (DUF827) (.1) AT1G62400 169 / 5e-46 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT3G27560 162 / 1e-43 ATN1 Protein kinase superfamily protein (.1) AT4G38470 164 / 2e-42 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G50180 158 / 4e-42 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020373 [exp] 1142 / 0 AT5G16730 610 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10020374 [exp] 552 / 0 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10020018 [exp] 169 / 1e-45 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 170 / 6e-45 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 169 / 1e-44 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10042122 [exp] 164 / 1e-43 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015541 [exp] 169 / 6e-43 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10035233 [exp] 156 / 2e-41 AT5G50180 567 / 0.0 Protein kinase superfamily protein (.1) Lus10022653 [exp] 159 / 3e-41 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079000 [exp] 794 / 0 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.019G047600 [exp] 723 / 0 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.018G001800 [exp] 499 / 7e-167 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 498 / 2e-166 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001900 [exp] 469 / 2e-155 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 464 / 2e-153 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 184 / 5e-51 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 181 / 4e-50 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 167 / 7e-45 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 166 / 1e-44 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10009550 pacid=23145705 polypeptide=Lus10009550 locus=Lus10009550.g ID=Lus10009550.BGIv1.0 annot-version=v1.0 ATGATTGGCAAGATGGAGGCTCCAAAGTTTACTGGTCTTATAGGTGGGAACAACCACAATGATAACAATTACTATGATTTGACCCAAGGGTTTTATCATA AACTTGGTGAGGGTACAAACATGTCCATCGACAGTTTACAAACGAGCAATGCTGGTGGTTCTGTGTCGATGTCTGTGGATAACAGCAGTGTTGGGTCCAA TGATTCTCTAACCCACATTTTGAGCCATCCTGGTCTAAAACCTGTCGCCCAAAACTACGGCGGAACTGTTGTCCATAGCTTAATCCGTCCAGGGAGGGTT AGCCATGTACTGAATGATGATGCATTGGCTCAAGCATTGATGGATCCTAAGTATCCAACTGAAGGCTTGGAGAATTATGATGACTGGACTATTGATCTGA GAAAACTCAACATGGGGATGGCATTTGCCCAAGGAGCTTTCGGCAAGTTATATAGAGGGATATACAATGGGGAAGATGTTGCAATCAAGATTTTGGAGAG GCCAGAGAATAGCCCCGAGAAGGCACAAGTGATGGAGCAGCAGTTTCAACAGGAAGTCATGATGCTTGCAACCTTAAAGCATGCTAACATTGTCCGCTTT ATTGGTGGATGCCGTAAGCCTATGGTTTGGTGTATAGTCACCGAGTATGCAAAGGGAGGCTCGGTTAGACAGTTTCTGACCAGGAGGCAGAATAGAGCTG TGCCACTGAAGTTGGCAGTCAAGCAGGCCTTGGATGTTGCTAGGGGAATGGCTTATGTCCACCATCTTGGCTTCATTCACCGTGATCTCAAGTCAGATAA CCTTCTGATTGCAGCTGATAGGTCTATAAAAATTGCTGATTTTGGTGTTGCACGGATTGAGGTGCAGACTGAGGGGATGACTCCAGAAACTGGAACATAC CGCTGGATGGCTCCATCTGGATTGTCTGAAACTCCTACGAAGCCATCACCAGGAACTCCAAGAGCAAGTAAACTCAACAGAGGAGTTGCAGCTAAATCAG ATGCTGCTTCATCACCTTCTCCATTGCTTAGTTCTCGCTCCCCTGGATCGGCCAATTCGACACCTACTGCTGCTGTTCGAAGATCAGCACCAAAGACTGC CACCACTCCACCTGAAGTGAAACCAATGGCTCGTGTGGCCGGGACGGTGAAGGGATCGGAGCTGCAGGCTCAGTTGAATGCAGTTCAGGAAGATCTCAAG ACGGCCAAAGAGAAGATCTCGGCGATGGAGAAGGAGAAGGAGCAAGCAGTTAGCGAGCTGAAAATCGCTCAGCAGGCTGCCGAGGCAGCGAATGCAAAGC TGCAAGAAGCTATGGTGGCTCAGAAGCGAGCAGAGGAGGATTCGGAGATCGAGAAGTTTCGTGCTGTTGAGTTGGAGCAGGCCGGGATCGAGGCTGGGAA TCTGAAGGAACAGGAATGGAAGAAGGAGATCGAAGCCGTGAAGAGCCAGCAGGAATCGGACGCTGCTAATCATCTTCTTACTACTCGGGAGCTTGAGAGA ATGAAGCAAGAAATGGATATGGCGACCGTTGCCAAGAATCAAGCGCTCAGCCAGGCCGATGATGCTACCAAGTTTGCCGAGAGTTGTGCAGAGAAGGTTT CGAGTCTTTCCGCTGAGTTGGCTCGATTGAGAGAGTTGCTTGATGCCAAAGTCGAGACTGAGGCGAGCGAAAGCAACAAGATGGTATTGAAGCTGAATGA GGAGATAGATTCTTTGAGTAAGGAGCTCGATAGAGCGAAAATGGTTGAAGACAAGATGATGGAGAAAGAAGCCTATATCGAACAGCTCAATGTCGAGGTA GAGGCAGCGAAGATGGCTGAATCGTATGCACGTAACCAGGCCGATGAATGGAAGAGCAAAGTCGAGCAGTTGGAGTCCAGAGTCGGAGAAGCAACCAAGC TGGAGAAGTCTGCATCGGAATCGCTGGGGTCGGTAATGAAACAGCTCGAAGAGAATCACGACATGCTGCACGATGCCGAGACTGAGATTACTGCTCTCAG GGAAAAGGTCGGACTGCTGGAAATGACCTTAGCTAGACAGAAGGGCGATCTCGAGGAATCAGAACGCCGTGCTGTTCTAGCACAGGAGCAATCTTCCGGG ATTGTAAAGGAGGTCGAGTCTCTTAAATCTGTGCTGGAAATTGCGAAGGAAGAGAAAGTCCAGGCGTTGAACAACGAGAAGCTTGCTGCTTCAAGCGTGC AAGGACTGCTCGAGGAGAAGAACAAACTCATCACCGAGCTCGAGAATTACAAGCAGGAGGAAGTTAAGAGCAAGCAGGCTATGGAGAGTTTAGCTTCAGC GTTTCATGAAGTGTCGTCTGAAGCGAGGGAAGCGAAGGAGAAACTTTCGTATGCTGAAACGGATCTCGAAAACTATGAGGCGCAGATCGAGGATCTGAGA TCGGTGTTGAAGGAGTCGAACGAGAGGTACGAGAACATGATAAACGATGCGAACCACGAGATCGATGTGTTGAAGAGCTCGGTCGAAGATTTGCAGATGT GTAAGTCCGAGTGGGAGGTCAAAGAGCAGAACCTCTTGGATTGCGTGAAGAAATCAGAGGAAGAGAATGCGGCTTTGGAGAAGGAAATCGATAGGCTGTT GAATTTGGTGAAGCATACTGAAGAGGAAGCTTGCGCTGCAAGGGAGGAAGAGGGGAGGGTGAAGAAGAGCTTGAAGGATGCTGAAGGGGAAGCAGTTTCA TTGCGGGAAGCTTTCGAGGATGCGAAAGCCGAGAGCGTGAAGCTGAAGGAGAGTTTAATGGATAAAGAGAATGAATTCCAGAGCGTGCTTCGGGAGAACG AGGAGCTCCATGTTAGTGAGGTCGATTCCCATAAGAGGATCGAGGAATTGTCGAAATTGCTCGAAGAAGCTCGGTTGACCGAAAGGCGAACTGAGGAGGA AGAAGAGAAAGGTGAGCTTTCCGACAGCGAGAAGGATTACGATTTGCTCCCCAAAGTGGTCGAATTCTCGGAAGAAAACGGACACGTAGCTGAAGAGAAG TCGCAGGAACACAGCAACGGTTCCTTGGAGAACAAGACACAACCACCACCACCTGCTGCTGAAATGGCTGGAGAAGAGACGAAGGAAGACGAAACAGTGG AGATCGAGTTCAAGATGTGGGAGAGCTGCAAGATTGAGAAGAAAGAGTTCTCCCCAGAGAGATCAGAAGAGCACAAACAGCTGGAGTCGTCGTTTGAGGA TGAACCCGAGTCCAAAGCGGACCAGGCTAACGAGCTGTCTTCGACCGAGAACCCTAATGATGAAGAATGTGCTACCAAGCAAGAACCAGATCAGCTGCAG GAGGCGAAGAAGAAGAAGAAGAAGCCATTGCTTTCCAAGTTTGGAAACCTGCTCAAGAAGAAGAGCAGTACCACCAGTACCACTTCTTCACCTACTCCTA CTGGTCCTAGTACTACTCCCACCACTACTGCAACCCAGAAACCTTAG
AA sequence Show only first row Show all	>Lus10009550 pacid=23145705 polypeptide=Lus10009550 locus=Lus10009550.g ID=Lus10009550.BGIv1.0 annot-version=v1.0 MIGKMEAPKFTGLIGGNNHNDNNYYDLTQGFYHKLGEGTNMSIDSLQTSNAGGSVSMSVDNSSVGSNDSLTHILSHPGLKPVAQNYGGTVVHSLIRPGRV SHVLNDDALAQALMDPKYPTEGLENYDDWTIDLRKLNMGMAFAQGAFGKLYRGIYNGEDVAIKILERPENSPEKAQVMEQQFQQEVMMLATLKHANIVRF IGGCRKPMVWCIVTEYAKGGSVRQFLTRRQNRAVPLKLAVKQALDVARGMAYVHHLGFIHRDLKSDNLLIAADRSIKIADFGVARIEVQTEGMTPETGTY RWMAPSGLSETPTKPSPGTPRASKLNRGVAAKSDAASSPSPLLSSRSPGSANSTPTAAVRRSAPKTATTPPEVKPMARVAGTVKGSELQAQLNAVQEDLK TAKEKISAMEKEKEQAVSELKIAQQAAEAANAKLQEAMVAQKRAEEDSEIEKFRAVELEQAGIEAGNLKEQEWKKEIEAVKSQQESDAANHLLTTRELER MKQEMDMATVAKNQALSQADDATKFAESCAEKVSSLSAELARLRELLDAKVETEASESNKMVLKLNEEIDSLSKELDRAKMVEDKMMEKEAYIEQLNVEV EAAKMAESYARNQADEWKSKVEQLESRVGEATKLEKSASESLGSVMKQLEENHDMLHDAETEITALREKVGLLEMTLARQKGDLEESERRAVLAQEQSSG IVKEVESLKSVLEIAKEEKVQALNNEKLAASSVQGLLEEKNKLITELENYKQEEVKSKQAMESLASAFHEVSSEAREAKEKLSYAETDLENYEAQIEDLR SVLKESNERYENMINDANHEIDVLKSSVEDLQMCKSEWEVKEQNLLDCVKKSEEENAALEKEIDRLLNLVKHTEEEACAAREEEGRVKKSLKDAEGEAVS LREAFEDAKAESVKLKESLMDKENEFQSVLRENEELHVSEVDSHKRIEELSKLLEEARLTERRTEEEEEKGELSDSEKDYDLLPKVVEFSEENGHVAEEK SQEHSNGSLENKTQPPPPAAEMAGEETKEDETVEIEFKMWESCKIEKKEFSPERSEEHKQLESSFEDEPESKADQANELSSTENPNDEECATKQEPDQLQ EAKKKKKKPLLSKFGNLLKKKSSTTSTTSSPTPTGPSTTPTTTATQKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	0	1
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	2.2	0.9260
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	2.4	0.9063
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	3.5	0.9108
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	4.0	0.9087
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	4.9	0.9238
AT3G12110		ACT11	actin-11 (.1)		Lus10021057 [exp]	4.9	0.9060
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	5.3	0.9061
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	6.5	0.8959
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	8.1	0.8816
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	8.5	0.9042

Compare expression of checked genes

Lus10009550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.