Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79790 190 / 3e-61 AtcpFHy1 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020375 [exp] 223 / 5e-69 AT3G59630 560 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143000 [exp] 199 / 1e-64 AT1G79790 296 / 9e-102 flavin mononucleotide hydrolase 1, Arabidopsis thaliana chloroplast FMN hydrolase 1, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009551 pacid=23145699 polypeptide=Lus10009551 locus=Lus10009551.g ID=Lus10009551.BGIv1.0 annot-version=v1.0 ATGGCACTCTTGCTTAGAGTTCCGGCCGCCGTGTCTTTCTCTTCCAGAGCCTCCGCCGCCAAGCCCACCAAATTCGCAACCTCCGCCGCCTCCATGTCAG GCGCCGCTCAGAGTAGCCGGAAGCTCCCCATACTGCTGTTTGACATCATGGACACCGTCGTTCGCGATCCTTTCTACGAGGATATCCCTTCCTTCTTCGG AATGTCAATGAAGGAGCTGATTGAATGTAAGCACCCGACTTCGTGGATGGAGTTTGAGAAGGGGATGATTGATGAGGTGGAGCTTTACTCCAAGTTCTTC AAAGATGGAAGGTCGTTTGATCTGGAAGGGTTAAAAAGCTGTATGAAGAAAGGATACCGTTACTTGGACGGTATGAAGGAGTTGCTTGATACCCTAAAGC AGAAGAACTACGAAATGCATGCTCTTACAAATTATCCTGTATGGATTCGGAATACAGAGGCAGCATCCGAAGTAGGCATGAAAGGTGTACACTTCAAGAA TGCAGATTCGCTCCGCGAAGATCTTGCTAGGCTTGGGGTAAACGTCTCGAAGGATGGTCCCTGA
AA sequence Show only first row Show all	>Lus10009551 pacid=23145699 polypeptide=Lus10009551 locus=Lus10009551.g ID=Lus10009551.BGIv1.0 annot-version=v1.0 MALLLRVPAAVSFSSRASAAKPTKFATSAASMSGAAQSSRKLPILLFDIMDTVVRDPFYEDIPSFFGMSMKELIECKHPTSWMEFEKGMIDEVELYSKFF KDGRSFDLEGLKSCMKKGYRYLDGMKELLDTLKQKNYEMHALTNYPVWIRNTEAASEVGMKGVHFKNADSLREDLARLGVNVSKDGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Lus10009551 [exp]	0	1
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	6.2	0.9116
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10020514 [exp]	6.3	0.8885
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10042919 [exp]	11.5	0.8975
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10007305 [exp]	16.3	0.9027
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039813 [exp]	16.9	0.8940
AT2G32760			unknown protein		Lus10016662 [exp]	18.7	0.8961
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	19.1	0.8972
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10033568 [exp]	20.8	0.8766
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	24.4	0.8947
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	24.7	0.8796

Compare expression of checked genes

Lus10009551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.