Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59630 559 / 0 diphthamide synthesis DPH2 family protein (.1) AT5G62030 92 / 6e-20 diphthamide synthesis DPH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020375 [exp] 934 / 0 AT3G59630 560 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10039108 [exp] 99 / 7e-22 AT5G62030 636 / 0.0 diphthamide synthesis DPH2 family protein (.1) Lus10038750 [exp] 97 / 2e-21 AT5G62030 574 / 0.0 diphthamide synthesis DPH2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123700 [exp] 619 / 0 AT3G59630 578 / 0.0 diphthamide synthesis DPH2 family protein (.1) Potri.019G041300 [exp] 112 / 1e-26 AT5G62030 623 / 0.0 diphthamide synthesis DPH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01866 [flax] [poplar] Diphthamide_syn Putative diphthamide synthesis protein
Representative CDS sequence Show only first row Show all	>Lus10009552 pacid=23145720 polypeptide=Lus10009552 locus=Lus10009552.g ID=Lus10009552.BGIv1.0 annot-version=v1.0 ATGGATTTCGAAGGGAGCTACGAGATTGAAGCCACCGCCGATTTCATCTACAGCCGCAACTTCTCCAGGGTGGCTTTGCAGTTCCCGGATGAGTTATTGA AGGATTCGATGAGAGTGGTGGGTGCATTGAGGGACAAGCTTCAGTTACTGAAGGAATCGGAACAAAAGGATGGTGCTAAAGAGGTTAGACTGTTTGTAAT GGCGGATGCAACTTATGGAAGCTGTTGCATAGATGAAGTTGGCGCTTCGCATATTGATGCCGAATGTGTTGTTCATTATGGACATACGTGTCTCAGCCCG ACCTCAGCCGTTCCAGCTTTCTTTGTTCTTGGAAATGCTTCAATAGACACTACAAAGTGTGCTGAGAGTTTGTCGAATTACGCATCAACAAGTGGAAGAC CTGTTTTGGTGCTCTATGGTCTGGAGTATGCGCATTCTATTTCATATATCCAGGAGGCAGTTGCTGCGTTGAACTCCACTTGTGAATATCACTTTTCTTG TGTTTCTTGTCGGGTAACGCATCCTCCGAAGCAATGTGAAACTTCTGAGGAGACCCCAAGTCCAGACTCTGTTTGTAGCACTGGTGGTGAGCTTAGTGTC ACACCTGGTTTTACAGGTAGCGTTGGAGGCTTGGTTTGGACTCTGCCCGAAGGGCACAAAATGGAGGATTACTCGCTTTTTTGGATTGGGGCTGATAATC CAGCGTTTGCCAACGCTGTACTGACATTCAATGGATGCGAAATAGTCAGATACGATGTGGATCGAGATTGCTTGATGACAGACTTATCTTCACAAAGAAG GATACTCAAGAAGAGATATTACCTAGTGGAGAAGGCAAAAGATGCCAATATCGTTGGGATATTGGTTGGGACTCTTGGAGTAGCTGGTTACCTCAATATG ATCCGTCAGATGAAGGACCTAATAACTGCTGCAGGGAAGAAGGTTTATACTTTCGTCATGGGACGACCAAACCCGGCAAAACTTGCCAACTTCCCCGAGT GTGATGTTTTCGTCTACGTCTCATGCCCTCAAACTGCTCTCCTAGATAGTAAAGAGTTCCTAGCTCCAGTCATTACTCCCTTTGAAGCAATGCTAAGTTT CAACAGAGGAAGCGAATGGACCGGAGCATATGTAATGAAATTCTGGGACTTGATTGAGACTCCTCTAGCAGCAGAGGCCGAACACGATCCTGAAGAAGCT CGATTTTCACTTATACAAGGTAGATACGTCGAGGACCTCAATCCTACCGAGAACACCGACGAGGAGGAAGAGAACGGAAAGGTCGCTTTGTCAAGCACGA TGGAAAAAGCTCTCCAACTGCGCGGCAAGGACACTACGCTGATCAACAGCAATGGAAAATTCGCAAGATCAGGGGCAGAGTATTTTGCGACGAGAACTTA TCACGGCCTGGACATGTACCACGACAGCAGCTCCCCAGTGGAGCCATTCTTGATTGGTAGGAGTGGTAAGGCCTCGGGCTACCAAGACGAAAGAAACAAG CCGGATAACTGA
AA sequence Show only first row Show all	>Lus10009552 pacid=23145720 polypeptide=Lus10009552 locus=Lus10009552.g ID=Lus10009552.BGIv1.0 annot-version=v1.0 MDFEGSYEIEATADFIYSRNFSRVALQFPDELLKDSMRVVGALRDKLQLLKESEQKDGAKEVRLFVMADATYGSCCIDEVGASHIDAECVVHYGHTCLSP TSAVPAFFVLGNASIDTTKCAESLSNYASTSGRPVLVLYGLEYAHSISYIQEAVAALNSTCEYHFSCVSCRVTHPPKQCETSEETPSPDSVCSTGGELSV TPGFTGSVGGLVWTLPEGHKMEDYSLFWIGADNPAFANAVLTFNGCEIVRYDVDRDCLMTDLSSQRRILKKRYYLVEKAKDANIVGILVGTLGVAGYLNM IRQMKDLITAAGKKVYTFVMGRPNPAKLANFPECDVFVYVSCPQTALLDSKEFLAPVITPFEAMLSFNRGSEWTGAYVMKFWDLIETPLAAEAEHDPEEA RFSLIQGRYVEDLNPTENTDEEEENGKVALSSTMEKALQLRGKDTTLINSNGKFARSGAEYFATRTYHGLDMYHDSSSPVEPFLIGRSGKASGYQDERNK PDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10009552 [exp]	0	1
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036277 [exp]	9.5	0.8111
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	10.1	0.8421
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10043337 [exp]	14.9	0.7891
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	16.1	0.8350
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	21.6	0.7566
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	22.7	0.8231
AT1G30240			unknown protein		Lus10014364 [exp]	23.3	0.8250
AT1G06790			RNA polymerase Rpb7 N-terminal...		Lus10035380 [exp]	28.2	0.7385
AT5G56900	C3HZnF		CwfJ-like family protein / zin...		Lus10021589 [exp]	34.0	0.8151
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	35.9	0.7915

Compare expression of checked genes

Lus10009552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.