Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27650 635 / 0 PEL1 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1) AT3G58390 572 / 0 Eukaryotic release factor 1 (eRF1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020376 [exp] 741 / 0 AT4G27650 611 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204500 [exp] 659 / 0 AT4G27650 635 / 0.0 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1) Potri.004G092600 [exp] 459 / 3e-162 AT4G27650 411 / 2e-143 PELOTA, Eukaryotic release factor 1 (eRF1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF03463 [flax] [poplar] eRF1_1 eRF1 domain 1 CL0101 [flax] [poplar] PELOTA PF03465 [flax] [poplar] eRF1_3 eRF1 domain 3 CL0267 [flax] [poplar] S11_L18p PF03464 [flax] [poplar] eRF1_2 eRF1 domain 2
Representative CDS sequence Show only first row Show all	>Lus10009553 pacid=23145741 polypeptide=Lus10009553 locus=Lus10009553.g ID=Lus10009553.BGIv1.0 annot-version=v1.0 ATGAAAATCATCAGGAGAGATTACACCCACGACGGCCCTGGGAGCATCAAGATGACGCCAGTTGATTCGGATGATCTATGGTATGCTTACAATCTGATTG TTCCTGGAGATCCCGTTATGGCCGTTACTGTCAGGAAGGTGTTGAGGGAGACGGCATCCGGTAATAGAGAAGCTGAGCGAGTGAAGCTCAAGTTGGAAGT CAAAGTTGAGGGCATTGAATATGATAAAGATGGGGGAGTCTTGCGAATTCGAGGGAAGAATATCCTTGAGAATGAACATGTGAAGATTGGACAGTTCCAT ACTTTGGAAATCGAGCTGCATCGTCCCTTTGTTTTGAGAAAAAAAATTTGGGATTCGTTGGCATTGGAGGTTATCAAGCAAGCCTCAGATCCTACTGCAA GTGCTGATGTGACTGTGCTTTTATTGCAAGAAGGATTAGCTCAAATTTTTCTGGTTGGTAGAAGTGTGACAACTTCACGTTCACGAATAGAAACCTCAAT ACCCCGTAAGCATGGGCCTGCAATTGCTGGTTATGATTCGGCACTCAATAAGTTTTTCCAGAATGTCTTACAGGCTTTCCTGAAACATGTCGACTTCAAT GTCGTTCGCTGTGCTGTGATTGCGAGTCCCGGTTTTACAAAGGACCAATTTCATCGCTATCTGTTGCTAGAGGCAGAGAGAAAACAACTGAGAACCATTA TTGAGAATAAGTCCAAGATCGTTCTGGTGCATACTACCTCTGGATACAAGCATAGTCTTAGAGAGGTGCTCGATGCACCAAATGTCATGAATATGATAAA AGACACTAAAGCAGCAGAAGAGGTCCGAGTTCTGAAGGATTTCTATGACATGCTCTCAAATGATCCCGATCGGGCATGCTATGGACCGAAGCATGTGGAA GTTGCTAACGAACGGTTAGCAGTCCAGACTCTCCTCATCACAGACGATCTCTTCAGGAATGCTGATATACCAACGAGACAGAAGTATGTGGAACTAGTCA AGTCAGTGAAGAGCAGTGGCGGAAAAGCTCACATCTTTTCCACAATGCACTCCTCGGGCGAGCAACTGGCGCAGTTGACTGGCATTGCTGCAATCCTCCG ATTCCCGCTACCAGACCTCGACGACATCGAAATGTGA
AA sequence Show only first row Show all	>Lus10009553 pacid=23145741 polypeptide=Lus10009553 locus=Lus10009553.g ID=Lus10009553.BGIv1.0 annot-version=v1.0 MKIIRRDYTHDGPGSIKMTPVDSDDLWYAYNLIVPGDPVMAVTVRKVLRETASGNREAERVKLKLEVKVEGIEYDKDGGVLRIRGKNILENEHVKIGQFH TLEIELHRPFVLRKKIWDSLALEVIKQASDPTASADVTVLLLQEGLAQIFLVGRSVTTSRSRIETSIPRKHGPAIAGYDSALNKFFQNVLQAFLKHVDFN VVRCAVIASPGFTKDQFHRYLLLEAERKQLRTIIENKSKIVLVHTTSGYKHSLREVLDAPNVMNMIKDTKAAEEVRVLKDFYDMLSNDPDRACYGPKHVE VANERLAVQTLLITDDLFRNADIPTRQKYVELVKSVKSSGGKAHIFSTMHSSGEQLAQLTGIAAILRFPLPDLDDIEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	0	1
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	3.5	0.8655
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	5.7	0.8723
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	6.0	0.8462
AT5G42000			ORMDL family protein (.1.2)		Lus10017314 [exp]	6.2	0.8095
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	8.2	0.8521
AT1G53400			Ubiquitin domain-containing pr...		Lus10015233 [exp]	9.9	0.8189
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	10.0	0.8077
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	14.1	0.8467
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	14.7	0.7908
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	15.2	0.8223

Compare expression of checked genes

Lus10009553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.