Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65090 89 / 5e-20 unknown protein AT5G36100 59 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020377 [exp] 239 / 8e-76 AT1G65090 100 / 3e-23 unknown protein Lus10020378 [exp] 61 / 2e-11 AT4G30390 115 / 4e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052300 [exp] 69 / 1e-12 AT5G36100 85 / 3e-18 unknown protein Potri.019G051850 [exp] 39 / 0.001 AT4G30390 109 / 2e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009554 pacid=23145754 polypeptide=Lus10009554 locus=Lus10009554.g ID=Lus10009554.BGIv1.0 annot-version=v1.0 ATGGAGCAGGAGAAGTATCAGGAAATGAACGGATCTGAGTCAGCTTCTGAGGTCGAATCCCCTTACGCTAGCAAGGGGTTAAACTTGGGGAAGATGATAC TGATGGCTGGTTTAGTGTTTTCCTCTGCACCAGTTGTTGTACCTGGAGTTATAGTGGTTTCTGCAATTGGGTTTGCTTGTTCCGTTCCTTATGGTCTTTT CTTGGCAACCCATTCCTTCACTCAGACTCTCTTGACCAAACTGATCCCTCTCCGAACCGTTATTGATACGGTTGGAGATGAAAGTTTGGGCATGTATGGA CAGAAGAACCTGAACGAAGATGAAACTGCTGAGGAAGATGGGTATGGAGAAGACGATGAGGAGGCGAGGAGCGTGGTTGTGGAAGGCGAAAACGCCCAGG AAAAGAATGAGAAGCTTGAAAAGGAAGCACCTTCGAAGGAGAGTGAAGCGGAAGCTTTGAAGAATGAGGATAAAACAGCTGACGCTCCATCTGAAGAGAC TGAGCATGGTACTACTACCGGCCCGAGTGAGGATGCTGCTGTTTCGCAATCTGTAGCTGAAAATGAAGGTGGCGGAGATGCCAATCAGGACGACGCAGAT GTGGCTTCAACTGAGGTAGTGAACGACGAGGAGAAGCTATGGGAACAGATGGACGGCCTGCGAGCAATTGTGGGATACTCGGGCTCTCGTTACTCGACTT GTTTGGAAGAGCTTGTGGCGCTGTACGTTTTCGTAGGAATTGAACTTGAACGACCTGCTGCATCGCTCAGTGACCCTCGTGATCTAGTAGTTTATCTGAA TGCTAAGCTTGGGGATCTGAAGTTGATTGTTGGTGTCAACTTCATTGACCCCCCAAAAAAGTGGTCTTTCTCCACAATTGACTCGCTATCCCTATTTTTG AGAACCGGCCAGCCTCCTCCATCTCTGCTTTCGCTCGCCATTGACGCATCTGTGTTTCACCTCTCAGCCTTCACCGATCTCTCCCCACTCCCCGATCACA TTCTCCTCGATCTCTTCCTGCTTGAATCTTTTAGTTATGGAGCATGGTTCTTGATTTTGAAGGATCAGACGCTGTTTTGGCTTGCAGAATGA
AA sequence Show only first row Show all	>Lus10009554 pacid=23145754 polypeptide=Lus10009554 locus=Lus10009554.g ID=Lus10009554.BGIv1.0 annot-version=v1.0 MEQEKYQEMNGSESASEVESPYASKGLNLGKMILMAGLVFSSAPVVVPGVIVVSAIGFACSVPYGLFLATHSFTQTLLTKLIPLRTVIDTVGDESLGMYG QKNLNEDETAEEDGYGEDDEEARSVVVEGENAQEKNEKLEKEAPSKESEAEALKNEDKTADAPSEETEHGTTTGPSEDAAVSQSVAENEGGGDANQDDAD VASTEVVNDEEKLWEQMDGLRAIVGYSGSRYSTCLEELVALYVFVGIELERPAASLSDPRDLVVYLNAKLGDLKLIVGVNFIDPPKKWSFSTIDSLSLFL RTGQPPPSLLSLAIDASVFHLSAFTDLSPLPDHILLDLFLLESFSYGAWFLILKDQTLFWLAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65090			unknown protein		Lus10009554 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10007045 [exp]	1.4	0.8138
AT5G38700			unknown protein		Lus10010019 [exp]	3.2	0.8024
AT1G23450			Tetratricopeptide repeat (TPR)...		Lus10029138 [exp]	4.0	0.7419
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	14.1	0.7304
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	14.6	0.7736
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	17.3	0.6959
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	18.7	0.7729
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	19.3	0.7194
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000445 [exp]	22.7	0.7636
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10005424 [exp]	22.8	0.7457

Compare expression of checked genes

Lus10009554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.