Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16510 526 / 0 RGP5 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) AT3G02230 350 / 8e-120 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) AT3G08900 347 / 1e-118 RGP3 reversibly glycosylated polypeptide 3 (.1) AT5G15650 345 / 5e-118 REVERSIBLYGLYCOSYLATEDPOLYPEPTIDE2, RGP2, ATRGP2 reversibly glycosylated polypeptide 2 (.1) AT5G50750 336 / 3e-114 RGP4 reversibly glycosylated polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020379 [exp] 701 / 0 AT5G16510 525 / 0.0 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Lus10004640 [exp] 360 / 1e-123 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10026676 [exp] 359 / 3e-123 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10036970 [exp] 354 / 1e-121 AT3G08900 645 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10000646 [exp] 354 / 3e-121 AT3G08900 662 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10005076 [exp] 354 / 4e-121 AT3G02230 662 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10022443 [exp] 352 / 1e-120 AT3G02230 642 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10017868 [exp] 350 / 6e-120 AT5G15650 648 / 0.0 reversibly glycosylated polypeptide 2 (.1) Lus10034376 [exp] 346 / 2e-118 AT3G02230 608 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051700 [exp] 573 / 0 AT5G16510 493 / 1e-176 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Potri.010G156700 [exp] 360 / 6e-124 AT3G08900 658 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.012G101100 [exp] 356 / 3e-122 AT3G02230 610 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Potri.008G097600 [exp] 353 / 3e-121 AT3G08900 669 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.015G060300 [exp] 352 / 9e-121 AT3G08900 650 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.017G099100 [exp] 352 / 1e-120 AT5G15650 671 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.004G117800 [exp] 350 / 8e-120 AT5G15650 663 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.015G099400 [exp] 53 / 1e-07 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03214 [flax] [poplar] RGP Reversibly glycosylated polypeptide
Representative CDS sequence Show only first row Show all	>Lus10009555 pacid=23145745 polypeptide=Lus10009555 locus=Lus10009555.g ID=Lus10009555.BGIv1.0 annot-version=v1.0 ATGGCTCAAGTTAACATTGAAGACAGTGAGGTAGACATTGTGATAGGAGCAGTACAGTCCGATCTGAGACCACTTATGACTGTGTGGAAGTCGATATTCT CTCGCTACCATTTGATCATTGTTCAGGATCCGGATCTCAAGGATGACCTGCAAATCCCGGAAGGTTTTGATCTCGATATCTATACAAAGTCTCACATAGA CAAACTAGTAGGAAACTCCAGCTCCATTGCTTTCTCCGGCTATTCGTGCAAGTATTTCGGCTTCCTCATGTCCCGTAAGAAGTACGTCGTCTCCATTGAC GACGACTGCGTTCCAACAAAAGATCCTGATGGTTTTCTCGTCGATCCAGTGGCTCACCATCTCCGTAACCTCGCAACTCCCGCAACGCCATTCTTCTTCA ACACCCTTTATGACCCGTATCGCGAGGGAGCTGATTTCGTCCGCGGATATCCGTTCAGCCTAAGAAGCGGCGTCCCCTGCGCCTTATCGTGCGGACTCTG GCTCAACTTATCCGACATGGACGCCCCAACGCAAGCCCTGAAGCCTGAAAACCGAAACTCTCGGTACGTCGATGCGGTGATGACAGTCCCGGCAAAGGCA ATGATGCCGATCAGCGGCATCAACATTGCTTTCAACCGAGAAATAGTAGGGCCCGCGCTATGCCCGGCTTTAAAGTTGGCTGGGGAAGGTAAAGTGAGGT GGGAGACGATGGAGGATATATGGAGCGGGATGTGCGTGAAGGTAGTGTGCGACCATCTCGGTTTGGGAGTCAAGAGCGGGCTCCCGTACGTGTGGAGGAA CGAGAGGGGTAACGCGATAGAGAGCTTGAAGAAGGAATGGGAAGGCGTGAAGCTGATGGAGGAAGTTGTTCCGTGTTTCCAGTCGATGGTGCTGCCCGAA AAGGCGACCAAGGCTGAAGATTGTGTTGCTGAGATGGCAAAAAGGGTGAAGAAGCAGTTGGGTGGCTCTCATCCTGGGTTCGGCTGTGCAGCGGACGCCA TGTTGGATTGGGTCGAGCTGTGGACCAATTACAGCTCTGGTCCTTCCCCTGTGTAA
AA sequence Show only first row Show all	>Lus10009555 pacid=23145745 polypeptide=Lus10009555 locus=Lus10009555.g ID=Lus10009555.BGIv1.0 annot-version=v1.0 MAQVNIEDSEVDIVIGAVQSDLRPLMTVWKSIFSRYHLIIVQDPDLKDDLQIPEGFDLDIYTKSHIDKLVGNSSSIAFSGYSCKYFGFLMSRKKYVVSID DDCVPTKDPDGFLVDPVAHHLRNLATPATPFFFNTLYDPYREGADFVRGYPFSLRSGVPCALSCGLWLNLSDMDAPTQALKPENRNSRYVDAVMTVPAKA MMPISGINIAFNREIVGPALCPALKLAGEGKVRWETMEDIWSGMCVKVVCDHLGLGVKSGLPYVWRNERGNAIESLKKEWEGVKLMEEVVPCFQSMVLPE KATKAEDCVAEMAKRVKKQLGGSHPGFGCAADAMLDWVELWTNYSSGPSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10009555 [exp]	0	1
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	1.0	0.8762
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10001806 [exp]	2.8	0.8102
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	5.5	0.8332
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10035270 [exp]	8.1	0.7821
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	8.9	0.7961
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	9.0	0.7768
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	14.9	0.7708
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	17.3	0.7558
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	17.4	0.8176
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027971 [exp]	20.0	0.7777

Compare expression of checked genes

Lus10009555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.