Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07020 672 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G43620 528 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT5G24750 63 / 4e-10 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020381 [exp] 828 / 0 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 774 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 735 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011882 [exp] 688 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 603 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 548 / 0 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 538 / 0 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 532 / 0 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10009557 [exp] 248 / 3e-78 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238600 [exp] 689 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G178300 [exp] 685 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G067100 [exp] 544 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 537 / 0 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.003G021100 [exp] 66 / 3e-11 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009556 pacid=23145690 polypeptide=Lus10009556 locus=Lus10009556.g ID=Lus10009556.BGIv1.0 annot-version=v1.0 ATGCTGAGATCGATCGCCCAACTGTGTGCAGGGGTTGGGGGAAACTCGAGAGAATCAGATACGTCTTCCAGTTATCAGCCTAAGGATGTCAAATCTGGAG AGTTTGAGACACTGGATGATGCACTGGAAGAAGAATTGTTACATGAAAAGTTAGCTATGGAAACGAAGCTGAAGTTATATAATCGCCTGGCTAAAATTCA AGAAGATGGAACTGTTCGATTTGAAGTCCCTGGAGATATAGAACCACGTAGCCTTGAACTTCAACCACTGGTTTATTCCGAAGCTGTGGAAGAGGATTCT GTTGACACAGAGGTCATGAAAGATATACCTCCGTTGCAAATTGTAATACTTATAGTTGGAACTCGAGGAGATGTGCAGCCATTTGCTGCCATTGGACAAC GCTTACAGGAAGATGGGCATAGAGTTAGACTTGCTACACACTCGAATTTTAAAGACTTTGTGTTGGATGCTGGTCTGGAGTTTTTCCCTCTAGGCGGAGA TGCCCAGCTTCTTGCTAGATTTATGGTAAAGAATAAAGGTTTCTTTCCATCGGATCCTTCAGAAATACCGATACAGAGGCAGCAAATGAGAGAAATCATA TTCTCTTTATCTGCTGCATGCACAGATCCAGACCCCGATACCAAAGTTCGATTCAAGGCAGAAGCCATAATCGCCAATCCCCCAACATATGGACACACTC ACGTGGCTGAGGCTCTGAAAGTACCATTACATGTTATGTTCACAATGCCCTGGACGGCTACTAATGAATTCCCACATCCTTTCACTCGTGTCAAGCAACC AGCTGCTTATAGGTTATCTTATCAAATAATCGACGCGCTTGTCTGGATTGGAATAGGAAACCTGATAAGCGAGTATAGAAAGAAACACCTGAAGCTAAGA CCTGTTACATATTTAAGTGGATCCCATAGCTCCCGAATGGAGTTGCCTTTTTGTTATATATGGAGCCCTCACCTCGTTCCCAAACCCAAAGACTGGGGTC CTAAATTGGACATCGTCGGCTTTTGCTTTCTTGACCTCGTCACGAACTATGAGCCTCCTACTGCTCTTAAGGACTGGCTAGGAAGTGGCGATGCGCCTAT CTATATTGGCTTTGGGAGCCTTCCTGTTCAAGAACCAGAGAAGATGACGGAGGTGATCATCAAGGCCCTGGAATTAACTGGTCAAAGGGGCATCCTAAAC AAAGGCTGGGGTGGATTGGGGAATTTGGCGAAACCCAATAAGAATGTGTACTCATTGGACAGTTGCCCCCATGATTGGTTGTTCTTCCGATGCAAAGCTG TGGTACATCACGGTGGAGCTGGAACAACAGCTGCTGGTCTAAGAGCAGCGTGTCCTACCGCGATCGTGCCATTCTTCGGAGACCAGTTCTTTTGGGGGGA ACAGGTCCATGCTCGAGGAGTAGGCCCATCACCTATCCCCGTCGAAGATTTCTCCACCGAGAAGCTCGTTTGCGCCATCGAATACATGCTGGATCCCATG GTGAAACAGCGGGCAGTCGATTTGGCCAAGGCAATGGAGAAGGAGGATGGAGTTACAGGTGCAGTAAAAGCCTTCTACAAACACTTCCCTGTCAAGAAGA TCGAATCGGCTGAACAGCCCGATCGAGACGGTTTGAAGATGAACAAGTCGTCTTGCTCGAAGTTTTCGTTCCGTAGATTTTTACAGTTGAAATAG
AA sequence Show only first row Show all	>Lus10009556 pacid=23145690 polypeptide=Lus10009556 locus=Lus10009556.g ID=Lus10009556.BGIv1.0 annot-version=v1.0 MLRSIAQLCAGVGGNSRESDTSSSYQPKDVKSGEFETLDDALEEELLHEKLAMETKLKLYNRLAKIQEDGTVRFEVPGDIEPRSLELQPLVYSEAVEEDS VDTEVMKDIPPLQIVILIVGTRGDVQPFAAIGQRLQEDGHRVRLATHSNFKDFVLDAGLEFFPLGGDAQLLARFMVKNKGFFPSDPSEIPIQRQQMREII FSLSAACTDPDPDTKVRFKAEAIIANPPTYGHTHVAEALKVPLHVMFTMPWTATNEFPHPFTRVKQPAAYRLSYQIIDALVWIGIGNLISEYRKKHLKLR PVTYLSGSHSSRMELPFCYIWSPHLVPKPKDWGPKLDIVGFCFLDLVTNYEPPTALKDWLGSGDAPIYIGFGSLPVQEPEKMTEVIIKALELTGQRGILN KGWGGLGNLAKPNKNVYSLDSCPHDWLFFRCKAVVHHGGAGTTAAGLRAACPTAIVPFFGDQFFWGEQVHARGVGPSPIPVEDFSTEKLVCAIEYMLDPM VKQRAVDLAKAMEKEDGVTGAVKAFYKHFPVKKIESAEQPDRDGLKMNKSSCSKFSFRRFLQLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009556 [exp]	0	1
					Lus10041871 [exp]	7.8	0.9534
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	16.3	0.9512
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10005282 [exp]	16.5	0.9501
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	19.1	0.9497
					Lus10021217 [exp]	20.0	0.9504
AT1G16290			unknown protein		Lus10036958 [exp]	21.5	0.9370
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10037371 [exp]	22.4	0.9491
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	23.0	0.9488
					Lus10014692 [exp]	25.1	0.9156
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	29.3	0.9493

Compare expression of checked genes

Lus10009556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.