Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07020 228 / 2e-70 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G43620 182 / 6e-53 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT5G24750 56 / 7e-09 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020382 [exp] 305 / 5e-100 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 248 / 2e-78 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020381 [exp] 246 / 7e-78 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011882 [exp] 247 / 2e-77 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 239 / 1e-75 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 235 / 7e-73 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10018878 [exp] 186 / 2e-54 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 183 / 3e-53 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10011883 [exp] 181 / 5e-53 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178300 [exp] 254 / 2e-80 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G238600 [exp] 253 / 3e-80 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G067100 [exp] 192 / 1e-56 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 191 / 4e-56 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.003G021100 [exp] 64 / 3e-11 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009557 pacid=23145693 polypeptide=Lus10009557 locus=Lus10009557.g ID=Lus10009557.BGIv1.0 annot-version=v1.0 ATGTCACGTAGTTGGCTATTGACTATTAGTCGTGTTGGATCAAAAGAGTACCTGTTATCCCAGAACATACCTGTTCAGAGGCAACAAATGAGAGAAATCA TATTCTCTTTACTTCCTGCGTGTCAGGATCCTGATCCTGAAACAAATATTCCGTTCAGAGCAGAAGCGATCATTGCCAATCCTCCAGCATATGGCCATAC ACATGTTGCAGAGGCACTAAAGGTGCCTTTACATGTGATCTTCACAATGCCTTGGACGCCTACTACTACTGAATTCCCACATCCTATGTCTCGTGTTAAA CAACCAGTGGCAAATAGAGTGAGCACTCTTTATTTGCAACAGCTTGTTCAAGAACCCGAGAAGATGACACAGATGATTGTAAAGGCTTTGGAACTTACTG GTCAAAGAGGCATCATCAACAAAGGCTGGGGTGGGTTAGGAAATTTGGCAGAACCAAAGGACTCCATCTACTTGCTGGACAATTGCCCTCATGACTGGCT CTTCCTAAGATGCAAGGCTGTGGTGCACCACGGAGGTGCTGGAACAACTGCTGCTGGTCTTAAAGCTGCGTGTCCAACCACTATAGTGCCTTTCTTCGGT GACCAGCCGTTTTGGGGAGATCGAGTCCATGCTAGAGGAGTCGGCCCTGCACCGATACCAGTGGACGAGTTCTCGACTGAAAAACTGGTCGAAGCAATCA AATACATGGTGGAGCCTGAGGTGAAACAGCGAGCAGTAGAAATCGGGAAGGCGATGGAGAATGAAGACGGGGTGGCAGGTGCGGTGAGAGGCTTCTACAA GCATTTCCCCTTGAAGAAGACAGAGGAGGAAGAAGCATGCTAA
AA sequence Show only first row Show all	>Lus10009557 pacid=23145693 polypeptide=Lus10009557 locus=Lus10009557.g ID=Lus10009557.BGIv1.0 annot-version=v1.0 MSRSWLLTISRVGSKEYLLSQNIPVQRQQMREIIFSLLPACQDPDPETNIPFRAEAIIANPPAYGHTHVAEALKVPLHVIFTMPWTPTTTEFPHPMSRVK QPVANRVSTLYLQQLVQEPEKMTQMIVKALELTGQRGIINKGWGGLGNLAEPKDSIYLLDNCPHDWLFLRCKAVVHHGGAGTTAAGLKAACPTTIVPFFG DQPFWGDRVHARGVGPAPIPVDEFSTEKLVEAIKYMVEPEVKQRAVEIGKAMENEDGVAGAVRGFYKHFPLKKTEEEEAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	0	1
					Lus10025164 [exp]	1.0	0.9413
AT5G35525			PLAC8 family protein (.1)		Lus10035039 [exp]	1.7	0.9329
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	2.8	0.9220
AT2G40290			Eukaryotic translation initiat...		Lus10024444 [exp]	4.5	0.9368
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	6.7	0.9182
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	6.8	0.8791
					Lus10008409 [exp]	10.7	0.9085
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	11.0	0.8926
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	12.0	0.8869
					Lus10030762 [exp]	12.4	0.9032

Compare expression of checked genes

Lus10009557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.