Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44800 91 / 8e-20 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT1G17520 41 / 0.001 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020383 [exp] 471 / 9e-158 AT5G16500 358 / 4e-110 Protein kinase superfamily protein (.1) Lus10038363 [exp] 83 / 3e-17 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10036223 [exp] 83 / 4e-17 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123400 [exp] 87 / 2e-18 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 83 / 2e-17 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.010G172100 [exp] 66 / 5e-12 AT5G44800 75 / 2e-14 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.010G171800 [exp] 38 / 0.0009 AT5G44800 47 / 2e-07 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009558 pacid=23145740 polypeptide=Lus10009558 locus=Lus10009558.g ID=Lus10009558.BGIv1.0 annot-version=v1.0 ATGACTTGCATACCGAGCAGTTCTTCCTTGAATTTGGATCTATCCTTGAAGATGGAACTGAAAACGGGTAACTTTTCATCTCGGACACCCTGCTCCCAGT TACCTCCTTGGAACGAAGAAAGAAGACAATTCACTCGAGCTGAAGTGACTGAAAACCACAGAACTTCATTCCTTAGACAAAGGATGTTGCTTGATAGGAT TGCGAATAAAGCAAGCCGTTTGAACTCAAACGGTGCTTTTCAAGACAGGATAGATGCTAGTTTGTGGTCAGAACAGGAACTGGACTCGCTCTGGATCGGC GTAAGAAGACACGGCAGGGACAATTGGCATACAATCTTAAGAGATCCAAGGCTTCACTTTCCTCCATGGAGAACTCCGAAGCACCTGGCCGACAAGTGGG AGGAGGAACAAGTCAAACTATTGGACGGCAAGCATCCTACTTCATGTCCAGTAACTTGGGACGGTTTCAGTGCTGAATCTAACCTCCCTTCTTCAGCAGC TGCACAGTTCCACGGCCCTTGCGGTGCCAAATTCAAGAGGCGTTCGAGGAACGCCAGAGATCAGGTTTACATACCACAGGGCTATTACCGCAGCGGTGCG CCCTGCTCAAACATACTCGGAGAAGCATATGGCAAGTTGCCGTTTAGTTACCTAGGAGCCTCGAGAGGTAACTTACCCCACTGGCTGAAAGAAGCGGTGA CCACTCCGAGACCGATCGAGGTAACTCCACCCCGAGTGGTTGCTTCCCTTGCTCATTGCGGGTTGACTCAAGTCGTCAGACCGTGTTCACACTCTTGTGA AACAGAAACCGGCCTGCGAAATAAAATCCCTGGCGGCGAGCTGCAGGTTATCGGAATAAGAAACGGGGTAACTCTACCTAGTTCGAATCCCCTGCACCGT GTTAATAAGCCAGATGATTTTGTCAGAGTTGACAGTGATGCATCTTCTGAAGAGACCATATCTGATGATCAAGGTGCTTAG
AA sequence Show only first row Show all	>Lus10009558 pacid=23145740 polypeptide=Lus10009558 locus=Lus10009558.g ID=Lus10009558.BGIv1.0 annot-version=v1.0 MTCIPSSSSLNLDLSLKMELKTGNFSSRTPCSQLPPWNEERRQFTRAEVTENHRTSFLRQRMLLDRIANKASRLNSNGAFQDRIDASLWSEQELDSLWIG VRRHGRDNWHTILRDPRLHFPPWRTPKHLADKWEEEQVKLLDGKHPTSCPVTWDGFSAESNLPSSAAAQFHGPCGAKFKRRSRNARDQVYIPQGYYRSGA PCSNILGEAYGKLPFSYLGASRGNLPHWLKEAVTTPRPIEVTPPRVVASLAHCGLTQVVRPCSHSCETETGLRNKIPGGELQVIGIRNGVTLPSSNPLHR VNKPDDFVRVDSDASSEETISDDQGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	0	1
AT5G66820			unknown protein		Lus10009344 [exp]	2.4	0.8537
AT5G66820			unknown protein		Lus10002968 [exp]	4.2	0.8133
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002216 [exp]	6.4	0.7325
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	7.5	0.7967
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	11.4	0.8159
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	12.0	0.7651
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	12.1	0.7287
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	13.0	0.7740
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	15.6	0.7808
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	16.6	0.8044

Compare expression of checked genes

Lus10009558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.