Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13690 403 / 2e-128 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G55200 399 / 5e-128 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 397 / 2e-127 Protein kinase superfamily protein (.1) AT1G70460 262 / 5e-76 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 260 / 2e-75 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 259 / 6e-75 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT5G38560 248 / 2e-71 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT2G18470 246 / 5e-71 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT3G24550 246 / 5e-71 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G68690 243 / 3e-69 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020384 [exp] 902 / 0 AT3G13690 101 / 2e-22 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10030950 [exp] 787 / 0 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 784 / 0 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020385 [exp] 550 / 0 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10006148 [exp] 396 / 4e-126 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 393 / 1e-123 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 362 / 7e-114 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 269 / 7e-80 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 267 / 2e-78 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034900 [exp] 404 / 6e-129 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 400 / 1e-127 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 382 / 3e-121 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 319 / 6e-97 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 318 / 7e-97 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 291 / 4e-88 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 270 / 7e-79 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 260 / 1e-75 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 257 / 5e-74 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 251 / 9e-73 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10009559 pacid=23145760 polypeptide=Lus10009559 locus=Lus10009559.g ID=Lus10009559.BGIv1.0 annot-version=v1.0 ATGAAAACTGGCGGGGAGGTGATAGTCGTAGCAGTCGACGCTGGGAAAGAGATCGTCGACGAAGCGATCATTTGGGCTCTCCGAAACGTCGCCCGCAATT TGGATACCCTCGTTCTTCTCCCTCTAGTCCCTTCCCGTGGCGGCGAAGTTGCCACAGTTGGTATCCCAACGGCCGTCAACCGAGCACAACAACAATCTAT TCATGGAATGGTGAAGAAATGGGTAGCGAAGAAGCTTCACAGAGAAGAGAGTACTCGGGGCTTGCCGCCGGATTTCGTACCGCAGCCGGAAGAAGCTCGA AGGATTAAGAAGATCTGTGCCGATATGATTCGCGTCCTAAGTCGGATTCACAAGAGACAGCTTCAAACCCAAGTTAAAGTCATAGTTGATGCACAGCTCG GCTCAGTGGCTTCAGCCGCAAGGGACCTCGAAGCGACATGGGTGATTCTCGACCGGCAATTGAAGAAAGAAGGGGAAATTTGCATGAAGCAGCTGAAATG CAACATAGTAGTAATGGAGCAATCGGCCCCAAAGGTAATGAGGACGGCGGTGAATCCTAATCGAATAAGGAGAAGGCACAGTGTCAGCAGTAGGGACGGG ATCGACCCCACCAACAGCACTCTGTGGGGGTTAATAAATCATACAAGTAGTAACACATCGACCGCCACAGAAATAGACAGTGATGATGCATCATCTTTTA AAATCGAGTCGGATGAAGAATCGTTCCGGAAGAAGGTATCCCAGACTCCTCCCGGCACGTTGTTCCATCTGGACTCGGTACTCGTCGAGAGGGAAATTGT GGAGGAAGGGTATAGTAATGCTCCGCATAAGGAGAAGATGCCGGAGTTGAACAGTTGTTCAGATGACGACGATGATGATGGTGGTGGTGACGGTCGTGAT GTTTTGATTTCCGGTCCGCATCCGGGTGCAAGTACTAGTGGGTTGAGTAAGAGCTATAGCGGACCTTCGAAATTCGAGAAAGTTTGGGAGAAGGTTGACC CTAGCAGCTCGGGTCAAAGAGCTACAATTCTACCGAGGAGGTCACTGGATGGGTGTCCACCTAGGAGGTCACTGGATGGGCACAACTTATCAAGATTTCG AGACAGTTTTAACCCACCAGGTCGAGTTCTAAGCCGGGGAGACTCATTGATCTCTAGCAAAACTACCAACCTGTTCGAAGAAGAAACCGGACAACAACAT CGCGAAATCCGGTTAGACGGTCCTTCGAACCTCGAAGAGAGAACTTCAAGCATCCGAAGAGCGATGACCCTTTCAATCAAGCCTCCGCCAATTCCACCAC CGTTGTGCTCAATGTGCAAGGACAAAGCTCCGATCTTCGGAAAGCCCCCCAAGAAGTTCACCTACGAGGAGATCAAATCCGTCACGAATGGATTCGCCCG CGAATCCATCCTGGCAGAGGGCGGGCGAGGCTTGGTGTACAAAGGGAAGCTTCCTAATGGACAAGTTGTGGCGGTGAAGCAGTGTAATGCGCTCACCGCC CAGGGTGCCTCGGAGCTCTGCTCCGAGGTTGAAGTGTTGAGCTGTGCTCAACACAAGAATTTGGTGATGTTGCTTGGGTATTGCATTGAGAGGGAGTGGT TGTTGGTGTATGAGTTTGCATGTAATGGGTCACTAGACAAACATTTGTACAAGCCCAATAGCCCGAACCATCCTGAATCCGTTGTTGCTGAAGAAGTGAT GGCGTGGGAGCACAGAATGAAGGTCGCGATCGGATCCGCCAGAGCGTTGAGATACCTTCACGAGGACTGCAGAGTTGGTTGCATCGTTCATCGAGACTTC CGGCCGCGGAATATCCTCCTTACTCATGATTTCGAGCCCATGGTAGGCGATTTCGGTCTAGCGAGATGGCAGTCGGATGGCCAGAAAGCCGAGGAAACTC GAGTAATCGGCGCAATCGGGTATTTAGCTCCAGAGTACACTCAAGCTGGGATTATAACAGAGAAAGCTGATGTCTATGCATTTGGGATAGTCCTCTTGGA GCTTCTCTGTGGTGTCAAAGCCACTGAGTTCTCAAGAACCATGGACCAAAACTTCCTCCTAGAGCTGGGGAGGTGGTTGGTAGAGAGGGATGTGATGAAT GAGATACTTGATCCAAGGTTGCAAGATAGCTATGTGGAGAATGAGGTGATGTGCATGGTGTATGCTTCTAGCTTGTGCCTATCTCCAAACCCCGACAATA GACCGAGAATGTCGAAGGTACTGAAGATCCTAGAAGGGGACATACCACAAGAATCAGTCAACAAAAACGGACGGCCCAGATTTGTCTACCCAAACCAGTT AGTCAACATGATCTACGGCCCAGATTTGCCTGCTTTCGAACGAGGTACTCCGGCAATTAAGGGCAATATGCAGGAAGCAGCACATTGGTGGAGGAACTCG AGCAACGTTGCTGAAATCCTTGCCAACCCCCCTCCGACGAAATCAGGCGGCGGAGAAGGAGCGAAAGGCGGCGGTCCTGTCGATGGTCGGATCGATTTCA GCGGCGAGTATAGGGAGTATTTGGAAGGGTCATTGACTAAGTTCTTTGATGGAATGGACCGACAGTAA
AA sequence Show only first row Show all	>Lus10009559 pacid=23145760 polypeptide=Lus10009559 locus=Lus10009559.g ID=Lus10009559.BGIv1.0 annot-version=v1.0 MKTGGEVIVVAVDAGKEIVDEAIIWALRNVARNLDTLVLLPLVPSRGGEVATVGIPTAVNRAQQQSIHGMVKKWVAKKLHREESTRGLPPDFVPQPEEAR RIKKICADMIRVLSRIHKRQLQTQVKVIVDAQLGSVASAARDLEATWVILDRQLKKEGEICMKQLKCNIVVMEQSAPKVMRTAVNPNRIRRRHSVSSRDG IDPTNSTLWGLINHTSSNTSTATEIDSDDASSFKIESDEESFRKKVSQTPPGTLFHLDSVLVEREIVEEGYSNAPHKEKMPELNSCSDDDDDDGGGDGRD VLISGPHPGASTSGLSKSYSGPSKFEKVWEKVDPSSSGQRATILPRRSLDGCPPRRSLDGHNLSRFRDSFNPPGRVLSRGDSLISSKTTNLFEEETGQQH REIRLDGPSNLEERTSSIRRAMTLSIKPPPIPPPLCSMCKDKAPIFGKPPKKFTYEEIKSVTNGFARESILAEGGRGLVYKGKLPNGQVVAVKQCNALTA QGASELCSEVEVLSCAQHKNLVMLLGYCIEREWLLVYEFACNGSLDKHLYKPNSPNHPESVVAEEVMAWEHRMKVAIGSARALRYLHEDCRVGCIVHRDF RPRNILLTHDFEPMVGDFGLARWQSDGQKAEETRVIGAIGYLAPEYTQAGIITEKADVYAFGIVLLELLCGVKATEFSRTMDQNFLLELGRWLVERDVMN EILDPRLQDSYVENEVMCMVYASSLCLSPNPDNRPRMSKVLKILEGDIPQESVNKNGRPRFVYPNQLVNMIYGPDLPAFERGTPAIKGNMQEAAHWWRNS SNVAEILANPPPTKSGGGEGAKGGGPVDGRIDFSGEYREYLEGSLTKFFDGMDRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	0	1
					Lus10003825 [exp]	3.0	0.9936
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	3.2	0.9865
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	3.3	0.9853
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	4.2	0.9936
AT5G17850			Sodium/calcium exchanger famil...		Lus10034284 [exp]	4.5	0.9477
AT2G29040			Exostosin family protein (.1)		Lus10001578 [exp]	5.1	0.9272
					Lus10029261 [exp]	5.2	0.9936
AT5G56990			unknown protein		Lus10029528 [exp]	6.0	0.9936
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	6.5	0.9388
					Lus10038051 [exp]	6.7	0.9936

Compare expression of checked genes

Lus10009559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.