Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61540 517 / 0 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT3G16150 77 / 1e-15 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT5G08100 66 / 7e-12 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT4G00590 59 / 2e-09 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020385 [exp] 533 / 0 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10034655 [exp] 84 / 1e-17 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034668 [exp] 82 / 2e-17 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 74 / 2e-14 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10040935 [exp] 59 / 4e-09 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 56 / 3e-08 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G191900 [exp] 527 / 0 AT5G61540 497 / 2e-177 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.002G122900 [exp] 80 / 2e-16 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.012G063400 [exp] 71 / 2e-13 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G022900 [exp] 69 / 8e-13 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.014G080600 [exp] 61 / 8e-10 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Lus10009560 pacid=23145731 polypeptide=Lus10009560 locus=Lus10009560.g ID=Lus10009560.BGIv1.0 annot-version=v1.0 ATGCGGAAGGCAAGCTTCTCCATCGGTTTCGTCTCCTCACTCACTTTGTTCCTCGCGGTAATTAACTTCCTCCCCTCCCGCGTCTTTGGTCCTCTCTTTC TATCTAAATCCACAGTGTGCCTAATCGATCTCGTTTTTCTCCTTGGAGGTTTTCAGTTGGTTGGTGGCTCCTCCGTCGTGGGGGATCCGTTAGTAGTGAG TACCTGGCCGTTCAAGGAAGCAGTCAGAGCTGCTTGGACGGCCGTTGACTCCGGCCTTTCCGCCGTCGAATCCGTCGTGGAAGGCTGCTCCGCTTGTGAA GTGCTCAGGTGCGATGGCACCGTAGGACCTGGTGGAAGTCCTGATGAGAATGGAGAAACCACCATTGATGCCATGATTATGAATGGGGTAACAATGGAGG TCGGGGCAGTCGGAGCCATGAGGTATGTGAAAGATGGCATAAGAGCAGCTAAGCTGGTAATGGATTACTCGAAGCACACTTTCCTAGTTGGCGAGAAGGC TTCTGTTTTCGCCATTTCGATGGGTCTCCAAGGGCCGACGAACCTTAGTTCGGTAGAGTCGATAGAGAAGTGGAGTGCTTGGAGGGACAATGGGTGCCAA CCCAATTTCAGACAGAATGTCTTGCCTGCAAACGGCTGTGGCCCTTATCATCATAATAACATGGACAAAGGAGAACAAGTGCTGCAGTGTTCTGCCGAGC CAAGGTCTTCTCTTGTTGGCCCTCACAACCATGACACCATATCAATGGCCGTCATTGATAGAATGGGGCATATTGCTGCTGGTACATCAACTAATGGAGC TAGTTTTAAGATCCCTGGCAGGGTTGGCGATGGACCCATAGCAGGATCTGCAGCTTACACAGATAGCGAAGTGGGAGCTTGTGGTGCAACTGGCGATGGT GACATCATGATGCGCTTCCTCCCATGCTACCAAGTTGTGGAGAGTATGAGACGAGGCATGGAACCTAAGCAAGCTGCAGAAGATGCAATCTCTCGCATTG CAACGAAGTTCCCTGATTTCGTTGGAGCTTTGTTTGCTGTGAATAAGAATGGAGTTCATGCTGGAGCTTGCCATGGATGGATATTCCAGTATTCTGTCAG GAACTCCCAGATGAACGACGTCCAGGTTTTCACAGTATTACCAGCCAATCGAAAAATACGTTACTGA
AA sequence Show only first row Show all	>Lus10009560 pacid=23145731 polypeptide=Lus10009560 locus=Lus10009560.g ID=Lus10009560.BGIv1.0 annot-version=v1.0 MRKASFSIGFVSSLTLFLAVINFLPSRVFGPLFLSKSTVCLIDLVFLLGGFQLVGGSSVVGDPLVVSTWPFKEAVRAAWTAVDSGLSAVESVVEGCSACE VLRCDGTVGPGGSPDENGETTIDAMIMNGVTMEVGAVGAMRYVKDGIRAAKLVMDYSKHTFLVGEKASVFAISMGLQGPTNLSSVESIEKWSAWRDNGCQ PNFRQNVLPANGCGPYHHNNMDKGEQVLQCSAEPRSSLVGPHNHDTISMAVIDRMGHIAAGTSTNGASFKIPGRVGDGPIAGSAAYTDSEVGACGATGDG DIMMRFLPCYQVVESMRRGMEPKQAAEDAISRIATKFPDFVGALFAVNKNGVHAGACHGWIFQYSVRNSQMNDVQVFTVLPANRKIRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	0	1
AT2G37480			unknown protein		Lus10025314 [exp]	1.0	0.9433
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	1.4	0.9403
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	3.9	0.9112
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027229 [exp]	6.3	0.8968
AT5G03430			phosphoadenosine phosphosulfat...		Lus10013826 [exp]	7.4	0.9029
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10040572 [exp]	8.0	0.9002
AT1G76710		ASHH1 ,SDG26	ASH1-RELATED PROTEIN 1, ASH1 R...		Lus10016600 [exp]	10.4	0.9142
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	11.6	0.9050
AT3G10260			Reticulon family protein (.1.2...		Lus10020718 [exp]	13.0	0.8836
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10004692 [exp]	13.1	0.8974

Compare expression of checked genes

Lus10009560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.