Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06980 44 / 2e-05 unknown protein AT2G30230 42 / 8e-05 unknown protein AT1G28190 41 / 0.0003 unknown protein AT1G29195 39 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020386 [exp] 298 / 4e-103 AT1G06980 44 / 3e-05 unknown protein Lus10025927 [exp] 68 / 8e-14 AT1G06980 43 / 4e-05 unknown protein Lus10038171 [exp] 64 / 1e-12 AT1G06980 46 / 2e-06 unknown protein Lus10026092 [exp] 59 / 1e-10 ND 42 / 5e-05 Lus10002327 [exp] 59 / 1e-10 AT1G29195 47 / 1e-06 unknown protein Lus10036859 [exp] 46 / 5e-06 AT1G06980 41 / 1e-04 unknown protein Lus10042244 [exp] 45 / 5e-06 AT1G06980 173 / 1e-55 unknown protein Lus10006211 [exp] 45 / 6e-06 AT1G06980 39 / 9e-04 unknown protein Lus10026407 [exp] 42 / 7e-05 AT1G06980 176 / 8e-57 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242400 [exp] 87 / 3e-20 AT1G06980 45 / 9e-06 unknown protein Potri.003G179600 [exp] 73 / 8e-16 ND / Potri.002G217100 [exp] 54 / 1e-08 ND / Potri.011G066500 [exp] 50 / 2e-07 AT1G29195 170 / 6e-54 unknown protein Potri.013G153100 [exp] 47 / 7e-07 AT2G30230 189 / 5e-62 unknown protein Potri.010G046225 [exp] 46 / 3e-06 ND / Potri.008G186700 [exp] 46 / 4e-06 AT5G50090 41 / 1e-04 unknown protein Potri.001G070700 [exp] 46 / 5e-06 AT1G28190 150 / 2e-44 unknown protein Potri.019G123900 [exp] 44 / 1e-05 AT2G30230 159 / 3e-50 unknown protein Potri.004G057500 [exp] 44 / 1e-05 AT1G29195 163 / 2e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009561 pacid=23145713 polypeptide=Lus10009561 locus=Lus10009561.g ID=Lus10009561.BGIv1.0 annot-version=v1.0 ATGGCGGCGGACTGCAGAGACCGGAGCAAGAAACCCTCGACGTTCATCAAGCTCGTACACCCGAAGGGAGTCGTCGAGATGCTGACCCGCCCGACCAGAG CTTCCGAGGTGATGAAGAAGTACCCGCGGCACTGCGTGACCCGACCCGACTTCTTCAAGTACCCCTGGATCGTCGTCCACCCGGACTCTGTCCTCAAGCT CGGCTGCTCCTTCTACGTCGTCCCTTTCCACACTATGGACCGCCTCCTCAAACAGTCCCGGCCGGACGGACATCAGCACCAGAGACAGCTCGTTCCGCCT CCGACGCCCCAGCGGCAGGGAACGTCGACGACGGCAACTGATTGTTCGCTGGAGATGATCGGATTCGACCAGCTGCTGCTGGAGCACCGACGATCTACCA GATCTGCACCGGAGGAGATCAGATCTAAAGTCGATTGCAGGTACAGCGAGCTTCCAGCGCCAGCGATTTTCCCTAATTGCTTGCTCGACCGCCGCCAGAC GGCGAGAACCAGACGGCGAGATATGAAACAGACGGCGGCGATTCCCCTCGGCCGTGGAAGGCGAGATCTGAAACTGACGGCGGCGATTCCCCTATGGCCT GGCCGCGGACGGCGTTGA
AA sequence Show only first row Show all	>Lus10009561 pacid=23145713 polypeptide=Lus10009561 locus=Lus10009561.g ID=Lus10009561.BGIv1.0 annot-version=v1.0 MAADCRDRSKKPSTFIKLVHPKGVVEMLTRPTRASEVMKKYPRHCVTRPDFFKYPWIVVHPDSVLKLGCSFYVVPFHTMDRLLKQSRPDGHQHQRQLVPP PTPQRQGTSTTATDCSLEMIGFDQLLLEHRRSTRSAPEEIRSKVDCRYSELPAPAIFPNCLLDRRQTARTRRRDMKQTAAIPLGRGRRDLKLTAAIPLWP GRGRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06980			unknown protein		Lus10009561 [exp]	0	1
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	1.0	0.7428
AT4G36050			endonuclease/exonuclease/phosp...		Lus10041907 [exp]	7.4	0.6766
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	8.2	0.7372
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	10.5	0.6537
AT4G04980			unknown protein		Lus10018473 [exp]	13.9	0.6795
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	15.1	0.7304
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10038808 [exp]	22.0	0.6516
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	26.3	0.6239
AT1G69800			Cystathionine beta-synthase (C...		Lus10030788 [exp]	30.0	0.6729
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Lus10017388 [exp]	36.0	0.6426

Compare expression of checked genes

Lus10009561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.