Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12910 612 / 0 SCPL20 serine carboxypeptidase-like 20 (.1) AT3G25420 592 / 0 SCPL21 serine carboxypeptidase-like 21 (.1) AT2G22990 315 / 2e-98 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT5G09640 311 / 9e-97 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT2G22920 300 / 4e-93 SCPL12 serine carboxypeptidase-like 12 (.1.2.3) AT1G73290 295 / 6e-91 SCPL5 serine carboxypeptidase-like 5 (.1) AT2G22980 293 / 1e-90 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4) AT3G12203 292 / 4e-90 SCPL17 serine carboxypeptidase-like 17 (.1) AT2G23010 291 / 7e-90 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT1G73300 291 / 2e-89 SCPL2 serine carboxypeptidase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020387 [exp] 880 / 0 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10025859 [exp] 763 / 0 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 757 / 0 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 555 / 0 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 550 / 0 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026830 [exp] 542 / 0 AT4G12910 595 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020207 [exp] 513 / 5e-175 AT4G12910 553 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10007731 [exp] 299 / 3e-92 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 298 / 8e-85 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177500 [exp] 720 / 0 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 577 / 0 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.013G124900 [exp] 315 / 3e-98 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 314 / 6e-98 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 313 / 2e-97 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 310 / 5e-96 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 309 / 7e-96 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290800 [exp] 300 / 3e-93 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 263 / 7e-79 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.018G103100 [exp] 249 / 2e-73 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10009562 pacid=23145715 polypeptide=Lus10009562 locus=Lus10009562.g ID=Lus10009562.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTCTCTCTTCTTACAAGCTGCTGTTCGTCTTCGTCTTCCTAAGATTTGCAGCTTTACCAGCTCACTCTGCTCCTAAGAATGCTATCGTCA CGCACCTCCCTGGATTCTCCGGCTCTTTCCCGTCCAAGCACTATTCTGGGTATGTGACGATAAATGAAGAAACGGGGAAGAGATTGTTCTACTATCTGGT CGAATCGGAGCGGAATCCGGCGAAGGATCCTCTTGTTCTTTGGCTCAATGGTGGTCCTGGTTGCTCTAGCTTCGATGGATTCGTGTATGAACATGGTCCT TTCAACTTTGAGAAGATAAAGCAAGGTCAACCCAGATTGCATCTCAACCCATATAGCTGGTCCAAGGTTTCGAATGTGTTGTATGTAGACTCTCCAGCTG GAGTTGGGTTGTCTTATGCGAAGAATGCATCAGAGTACAAGACTGGGGATCTAAAGACTGCCTTAGATTCCCACACCTTCCTCTTGAAGAATGAAGGATT AACGTCATCCCAATCACTCGAGTTGTCTTTAATTTGTGCAAAACAGTGGTTCGAGCTGTACCCAGAGTTTATCTCGAACCCGTTTTTCATCACTGGGGAA TCATATGCTGGGATATATGTCCCAACTCTTGCCTATGAAGTTGCTAAAGGAATTGATGCTGGTGTTAAGCCTCTCATCAATCTGAAGGGCTATATGGTTG GGAATGGAGTTACTGATGATGTATTCGACGGAAATGCACTTGTTCCATTTGCACACGGGATGGGACTCATCTCAGATGACCTCTATCTGGAGGTGAACCG AGCGTGCAACGGAAGCTTCTATAATCCAATCGAGCAGCAGTGTGAGAACAAAATGCGAGAAGTTGATAGGGGACTACGTGGTCTGAACATATACGACATC CTAGAACCGTGCTATCATTCTGATGTCGTCGCTAAAGATGACAAAATCAGAATGCCATCAAGCTTCTTGGAATTGGGTGCAACCTCAGATCGGCCTCTTC CCGTTAGGACGAGGATGTTTGGTCGCGCCTGGCCATTCCGAGCTAATGTCAGGGCCGGGATTGTTCCGACTTGGCCACAAATCCTCAACAGTGCTGACCT CAACAATGAAGACGTCCCATGCACTGATGATGAAGTTGCTACAGTATGGCTTAATAATGAAGCAGTTAGAGAAGCGCTCCATGCTGAACCAAAAAACGTA TCGGGGGATTGGGAGCTGTGTACAAACAGGATCGTCTTCAATCATGATGCTGGTAGCATAATCAACTACCATAGGAACCTGACTTTGCGAGGATATCGCG CCCTCATTTTCAGTGGGGATCATGACATGTGTGTACCGTACACCGGAAGTGAAGCATGGACGAGATCGTTGGGATACAATATCGTCGACATATGGAGACC CTGGCTCTCAAATGGACAAGTTGCTGGGTACACTCAAGGGTATGCAAACAACCTCACTTTCTTAACAGTTGTTTCGAATGTGTTGTATGTAGACTCTCCA GCTGGAGTTGGGTTGTCTTATGCGAAGAATGCATCAGAGTACAAGACTGGGGATCTAAAGACTGCCTTAGATTCCCACACCTTCCTCTTGAAGTGGTTCG AGCTGTACCCAGAGTTTATCTCGAACCCGTTTTTCATCACTGGGGAATCATATGCTGGGATATATGTCCCAACTCTTGCCTATGAAGTTGCTAAAGGAAT TGATGCTGGTGTTAAGCCTCTCATCAATCTGAAGGGCTATATGGTTGGGAATGGAGTTACTGATGATGTATTCGACGGAAATGCACTTGTTCCATTTGCA CACGGGATGGGACTCATCTCAGATGACCTCTATCTGGAGGTGAACCGAGCGTGCAACGGAAGCTTCTATAATCCAATCGAGCAGCAGTGTGAGAACAAAA TGCGAGAAGTTGATAGGGGACTACGTGGTCTGAACATATACGACATCCTAGAACCGTGCTATCATTCTGATGTCGTCGCTAAAGATGACAAAATCAGAAT GCCATCAAGCTTCTTGGAATTGGGTGCAACCTCAGATCGGCCTCTTCCCGTTAGGACGAGGATGTTTGGTCGCGCCTGGCCATTCCGAGCTAATGTCAGG GCCGGGATTGTTCCGACTTGGCCACAAATCCTCAACAGTGCTGACCTCAACAATGAAGACGTCCCATGCACTGATGATGAAGTTGCTACAGTATGGCTTA ATAATGAAGCAGTTAGAGAAGCGCTCCATGCTGAACCAAAAAACGTATCGGGGGATTGGGAGCTGTGTACGAACAGGATCGTCTTCGATCATGATGCTGG TAGCATGATCAACTACCATAGGAACCTGACTTTGCGAGGATATCGCGCCCTCATTTTCAGTGGGGATCATGACATGTGTGTACCGTACACCGGAAGTGAA GCATGGACGAGATCGTTGGGATACAATATCGTCGACATATGGAGACCCTGGCTCTCAAATGGACAAGTTGCTGGGTACACTCAAGGGTATGCAAACAACC TCACTTTCTTAACAGTCAAGGGCTCCGGGCACACGGTTCCGGAGTACAAACCAAGGGAAGCACTAGACATGTACAGCAGGTTTCTTGCAGGACAAGCAAT GTGA
AA sequence Show only first row Show all	>Lus10009562 pacid=23145715 polypeptide=Lus10009562 locus=Lus10009562.g ID=Lus10009562.BGIv1.0 annot-version=v1.0 MAAALSSYKLLFVFVFLRFAALPAHSAPKNAIVTHLPGFSGSFPSKHYSGYVTINEETGKRLFYYLVESERNPAKDPLVLWLNGGPGCSSFDGFVYEHGP FNFEKIKQGQPRLHLNPYSWSKVSNVLYVDSPAGVGLSYAKNASEYKTGDLKTALDSHTFLLKNEGLTSSQSLELSLICAKQWFELYPEFISNPFFITGE SYAGIYVPTLAYEVAKGIDAGVKPLINLKGYMVGNGVTDDVFDGNALVPFAHGMGLISDDLYLEVNRACNGSFYNPIEQQCENKMREVDRGLRGLNIYDI LEPCYHSDVVAKDDKIRMPSSFLELGATSDRPLPVRTRMFGRAWPFRANVRAGIVPTWPQILNSADLNNEDVPCTDDEVATVWLNNEAVREALHAEPKNV SGDWELCTNRIVFNHDAGSIINYHRNLTLRGYRALIFSGDHDMCVPYTGSEAWTRSLGYNIVDIWRPWLSNGQVAGYTQGYANNLTFLTVVSNVLYVDSP AGVGLSYAKNASEYKTGDLKTALDSHTFLLKWFELYPEFISNPFFITGESYAGIYVPTLAYEVAKGIDAGVKPLINLKGYMVGNGVTDDVFDGNALVPFA HGMGLISDDLYLEVNRACNGSFYNPIEQQCENKMREVDRGLRGLNIYDILEPCYHSDVVAKDDKIRMPSSFLELGATSDRPLPVRTRMFGRAWPFRANVR AGIVPTWPQILNSADLNNEDVPCTDDEVATVWLNNEAVREALHAEPKNVSGDWELCTNRIVFDHDAGSMINYHRNLTLRGYRALIFSGDHDMCVPYTGSE AWTRSLGYNIVDIWRPWLSNGQVAGYTQGYANNLTFLTVKGSGHTVPEYKPREALDMYSRFLAGQAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	0	1
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	1.4	0.9562
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	2.4	0.9467
AT3G45070			P-loop containing nucleoside t...		Lus10041611 [exp]	2.4	0.9190
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	3.6	0.8961
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10012884 [exp]	5.1	0.8721
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	5.2	0.9271
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	6.3	0.9223
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	6.7	0.9201
					Lus10011890 [exp]	7.3	0.9092
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	8.8	0.9151

Compare expression of checked genes

Lus10009562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.