Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25430 545 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G55870 193 / 4e-53 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020388 [exp] 1110 / 0 AT3G25430 565 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10033691 [exp] 207 / 4e-58 AT1G55870 713 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10002539 [exp] 177 / 5e-53 AT3G25430 87 / 9e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031646 [exp] 167 / 4e-44 AT1G55870 637 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177400 [exp] 676 / 0 AT3G25430 667 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.014G018500 [exp] 664 / 0 AT3G25430 662 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G368401 [exp] 219 / 2e-62 AT1G55870 685 / 0.0 ARABIDOPSIS THALIANA POLY\(A\) RIBONUCLEASE, ABA-HYPERSENSITIVE GERMINATION 2, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10009563 pacid=23145747 polypeptide=Lus10009563 locus=Lus10009563.g ID=Lus10009563.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCTCTGCCGCGGCGCTTGTTCTGCACCCAGGCCGCCGGCAATGCGTCCGGAAGCCACAGTCCATGGAGCGTGAAGCAAGTGAGGAAGTCTA ACTTCACCGATTCCCTCGTCGAAGAAATCAAATCACAAGTCTCCGCCTCGGACTTCGTCGCCGTCTCTTTACAGAAGACCGGCTCCTTCTCGTCTCCATG GCACCGTCCTTCTCCGTTCGACACTCCGGACATCGCTTACTTGAAGGCGAAGTACGCCGCCGACCGATTTCAGGTCTTCCAGCTCGCGATTTGCCCCTTC CGGATTCGAGCTCCCACCGTCACTGCGTATCCATATAACTTTCACTTGTTCCCGAGGGATGAAACGAAGGTTGGAGTCCCTCCGTCGTACAGTTTCTCTT GTCAGTCATCGAGTTTGGTTGCTATGGCTCGAGATGGATTCGATTTCAATGCTTGCATTAATGATGGGATATCGTACTTGTCTAGAGAGCAAGAATCTAT GGTGAAATCTCGGGCAGATAGTCCCAGACCAGTAAAAGTTAATGAATTGGGAGAATCTGCTTCTCCACTTTCCGTTGCAGATTCGATTTTCATCGAAAGG ATGAAAACACGAGTGAAGAATTGGAAAAATGCAGTTCAAGACTCTAGTAGCAATGCAAAGGCAGAGACACTGATAAAAGCCTTACGAAGGCTCATCGTGG AGACCGAGAAGTTTGAATCAAGACCATGCATGAGCATTGATGTTTGCAGCGAACGACAAACACATCTTGTAGCTAAGATGTTGCAAAATTACGACGATAA CCTTGTTCCTTTGATGATTCCAGCAAAGTCAGGAGGAAGCCAGGCAGTTCGTGTTGTCTTGACAAGTTCAAAAGAAGACCGGGATCTTCTTCTTGAAACG CTTCGGAACCTTGACAAAGAAGCAAACAAGAAAATCCGTGGCTTCCGAGATGTGATTGATTTGATTTCTTCTTCACAGAAGCCTATTGTCTCCCACAATT CCCTTAATGATTTAACGTTCATCCATTCCAAGTTTATTGCACCCTTGCCTCCTTCTATGGAGGAGTTCATGGTCTCCTTACACAAGGTCTTCCCCACCGT CATTGATGTCAACCATCTTGTCAAGGAAACCGGTCTCCGAAAAAATGTTGCAAGCGTACCTTACATCATCTCGTACTTGAAACATCGGTTTCCTGCACCA GTTGACGTAGAAATTCCATTTCAAGTTGACGAAGGCGAAATTCATGGGCATAACGTTGTGAGCATATCTGAATTGTTTGCAAAGTTATGCTGCATACTCA AACTCACACCTGGCTCAGGGGAACAGCATTTCGAGAATCACGGTTCTTCTCTTCGTGCTTTTGCGAATAATTTCCACCCGCAACTACGAGAACCAAGCGA TGGAGAAATCGGAGTATGGAGTAGCAGCAACACAAAGCAAGTGAGATGCTCCGATCTAGTCTTCTTGTGGGGATTCAGGAGCGGTACGACTGCAGGAAAG CTGAAAACTTTGCTGGAGGGGTCTCACGCTGTTTTCTCTGAAGATTTTCATGTCCGATTAGTGGACAAGAGCTGTGCGATCGTTGTTTTCTCGAGTCCTA GTTCATTTAAAACCTTCCTGAATGCAATGTCCAATCTCTCAGACACATCATCCAGCTCTTTAAAGGAGCTTGCATCCGAAGGCATAACAGCAGCCGGGTA CGAGACTTACGAGGGAGCTTGCAAGTCCGGGTTCTGGGAGGCTAATTTAGCAGATTCGCTAGACAAAGTCATCGCAGCAGACCGCCGTTCGAAGAGTGAT CAGAGAACAAAATCAACAGAGAGTCGCCAGAAGAACGAGTTGATAATCGATTTCAATGATCTCTAA
AA sequence Show only first row Show all	>Lus10009563 pacid=23145747 polypeptide=Lus10009563 locus=Lus10009563.g ID=Lus10009563.BGIv1.0 annot-version=v1.0 MAAALPRRLFCTQAAGNASGSHSPWSVKQVRKSNFTDSLVEEIKSQVSASDFVAVSLQKTGSFSSPWHRPSPFDTPDIAYLKAKYAADRFQVFQLAICPF RIRAPTVTAYPYNFHLFPRDETKVGVPPSYSFSCQSSSLVAMARDGFDFNACINDGISYLSREQESMVKSRADSPRPVKVNELGESASPLSVADSIFIER MKTRVKNWKNAVQDSSSNAKAETLIKALRRLIVETEKFESRPCMSIDVCSERQTHLVAKMLQNYDDNLVPLMIPAKSGGSQAVRVVLTSSKEDRDLLLET LRNLDKEANKKIRGFRDVIDLISSSQKPIVSHNSLNDLTFIHSKFIAPLPPSMEEFMVSLHKVFPTVIDVNHLVKETGLRKNVASVPYIISYLKHRFPAP VDVEIPFQVDEGEIHGHNVVSISELFAKLCCILKLTPGSGEQHFENHGSSLRAFANNFHPQLREPSDGEIGVWSSSNTKQVRCSDLVFLWGFRSGTTAGK LKTLLEGSHAVFSEDFHVRLVDKSCAIVVFSSPSSFKTFLNAMSNLSDTSSSSLKELASEGITAAGYETYEGACKSGFWEANLADSLDKVIAADRRSKSD QRTKSTESRQKNELIIDFNDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25430			Polynucleotidyl transferase, r...		Lus10009563 [exp]	0	1
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	1.4	0.9601
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	2.4	0.9578
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	4.2	0.9543
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	6.3	0.9500
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	8.9	0.9466
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	9.2	0.9467
AT5G01660			unknown protein		Lus10012220 [exp]	11.0	0.9245
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	11.0	0.9396
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	11.0	0.9381
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	11.0	0.9497

Compare expression of checked genes

Lus10009563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.