Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07490 232 / 2e-79 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT1G05990 216 / 3e-73 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G12860 206 / 3e-69 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT2G43290 204 / 1e-67 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT4G03290 198 / 4e-66 EF hand calcium-binding protein family (.1) AT3G59440 182 / 2e-59 Calcium-binding EF-hand family protein (.1) AT5G37770 113 / 1e-32 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G73630 109 / 4e-31 EF hand calcium-binding protein family (.1) AT1G18210 109 / 7e-31 Calcium-binding EF-hand family protein (.1.2) AT1G24620 106 / 1e-29 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038088 [exp] 149 / 1e-45 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10020389 [exp] 143 / 2e-45 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10006644 [exp] 148 / 3e-45 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10027701 [exp] 145 / 4e-44 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10039986 [exp] 127 / 2e-37 AT3G07490 132 / 3e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10018012 [exp] 121 / 2e-35 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 117 / 9e-34 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 112 / 6e-32 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 103 / 1e-28 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239100 [exp] 244 / 2e-84 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G029700 [exp] 234 / 2e-79 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 231 / 3e-78 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.018G127100 [exp] 137 / 6e-41 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 135 / 2e-40 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G126200 [exp] 117 / 3e-34 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 113 / 1e-32 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.012G048200 [exp] 113 / 2e-32 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 110 / 4e-31 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.010G107100 [exp] 108 / 2e-30 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009564 pacid=23145694 polypeptide=Lus10009564 locus=Lus10009564.g ID=Lus10009564.BGIv1.0 annot-version=v1.0 ATGGACGCGAACGAGCTGAGGAGAGTGTTCCAGATGTTCGACAAGAACGGGGACGGGCAGATCACGAAGAAGGAGCTGAGCGACTCGCTCCAGAACCTGG GGATCTACATCCCGGAGGTCGACCTGACGCAGATGATCGAGAAGATCGACGTCAACGGCGACGGATTCGTCGATATGGACGAGTTCGGCGAGCTCTACCA GACGATCATGGACGAGAGGGACGAGGAGGAGGACATGCGGGAGGCGTTCAACGTTTTCGACCAGAACGGCGACGGATTCATCACCGTCGACGAGCTCCGG TCCGTGCTGGCGTCCCTGGGCCTCAAGCAAGGCCGCACTGTCGAGGATTGCCGGAGGATGATCATGAAGGTCGACGTCGACGGCGACGGGATGGTTAATT TCAAGGAGTTCAAGCAGATGATGAAAGGCGGTGGGTTCGCTGCTCTGAGCTCCAGCTGA
AA sequence Show only first row Show all	>Lus10009564 pacid=23145694 polypeptide=Lus10009564 locus=Lus10009564.g ID=Lus10009564.BGIv1.0 annot-version=v1.0 MDANELRRVFQMFDKNGDGQITKKELSDSLQNLGIYIPEVDLTQMIEKIDVNGDGFVDMDEFGELYQTIMDERDEEEDMREAFNVFDQNGDGFITVDELR SVLASLGLKQGRTVEDCRRMIMKVDVDGDGMVNFKEFKQMMKGGGFAALSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	0	1
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10008812 [exp]	2.0	0.9199
AT1G06475			unknown protein		Lus10020752 [exp]	2.0	0.8930
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	3.7	0.9075
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10031640 [exp]	5.0	0.8919
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	8.9	0.8789
AT1G27100			Actin cross-linking protein (....		Lus10037230 [exp]	9.2	0.8847
AT5G42200			RING/U-box superfamily protein...		Lus10034551 [exp]	9.2	0.8512
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	9.9	0.8789
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	10.6	0.8826
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	11.4	0.8376

Compare expression of checked genes

Lus10009564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.