Plant FIBer expression Database

Lus10009565 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07480 213 / 7e-72 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009568
[exp]
295 / 6e-104 AT3G07480 236 / 6e-81 2Fe-2S ferredoxin-like superfamily protein (.1)
Lus10020390
[exp]
278 / 2e-97 AT3G07480 238 / 2e-81 2Fe-2S ferredoxin-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G239000
[exp]
233 / 1e-79 AT3G07480 236 / 5e-81 2Fe-2S ferredoxin-like superfamily protein (.1)
Potri.014G177100
[exp]
226 / 3e-77 AT3G07480 239 / 2e-82 2Fe-2S ferredoxin-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10009565 pacid=23145723 polypeptide=Lus10009565 locus=Lus10009565.g ID=Lus10009565.BGIv1.0 annot-version=v1.0
ATGGCGACCTCGAGGCTCTATCGACTCTCCTCGCAAATCCACCGTCTCTCTGCTTCATCATCTCCCTTAACCAAATCCATCATCACCCGCTCCTCCGCCA
CCGCCGCGGCTGAAGTAGCTTCCCGAGCAGGCACCGCCAAGGTCTCCGACAGGATCGTGAAGCTCTTTGCGATCGACCCGGAAGGACACAAGCGAGAGAT
CATCGGGCTCACGGGGCAGACTCTACTCAAGGCACTGACCAACCATGGCCTAATCGACCCTGCGTCCCACCGATTGGAGGACATCGATGCCTGCTCCGCA
GAGTGCGAGGTCAGCATCGCGCAGGAGTGGCTCCAGAGGCTTCCCGCCAGATCCTACGACGAGGAGTACGTGCTGAAGCGGAACTCCAGGGTTAGGGTGC
TGAACCAGCACTCCAGGTTGGGGTGCCAAGTTGTGATCACTTCTCAGCTCCAAGGTATGGTTGTTGCTGTTCCTGAGCCTAGACCGTGGGACACTCCGTA
A
AA sequence
>Lus10009565 pacid=23145723 polypeptide=Lus10009565 locus=Lus10009565.g ID=Lus10009565.BGIv1.0 annot-version=v1.0
MATSRLYRLSSQIHRLSASSSPLTKSIITRSSATAAAEVASRAGTAKVSDRIVKLFAIDPEGHKREIIGLTGQTLLKALTNHGLIDPASHRLEDIDACSA
ECEVSIAQEWLQRLPARSYDEEYVLKRNSRVRVLNQHSRLGCQVVITSQLQGMVVAVPEPRPWDTP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07480 2Fe-2S ferredoxin-like superfa... Lus10009565
[exp]
0 1
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10041870
[exp]
1.0 0.9111
AT3G25580 Thioredoxin superfamily protei... Lus10013889
[exp]
2.4 0.8884
AT3G14240 Subtilase family protein (.1) Lus10037449
[exp]
2.8 0.8979
AT2G21170 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHA... Lus10007575
[exp]
4.0 0.8882
AT3G48680 AtCAL2, GAMMACA... gamma carbonic anhydrase-like ... Lus10031847
[exp]
4.5 0.8879
AT2G29900 PS2 Presenilin-2 (.1) Lus10031966
[exp]
4.5 0.8724
AT1G01840 unknown protein Lus10041376
[exp]
7.1 0.8623
AT2G45590 Protein kinase superfamily pro... Lus10041395
[exp]
7.5 0.8688
AT4G29240 Leucine-rich repeat (LRR) fami... Lus10012929
[exp]
7.9 0.8398
AT1G27310 NTF2A nuclear transport factor 2A (.... Lus10035202
[exp]
7.9 0.8804

Lus10009565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.