Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25440 382 / 7e-130 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 167 / 7e-48 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G13070 164 / 6e-47 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 145 / 2e-38 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT4G29750 112 / 2e-26 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G18390 109 / 2e-25 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 108 / 4e-25 ATCFM3B CRM family member 3B (.1) AT3G23070 107 / 7e-25 ATCFM3A CRM family member 3A (.1) AT3G01370 98 / 1e-21 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT5G16180 83 / 8e-17 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020391 [exp] 626 / 0 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10009569 [exp] 236 / 2e-76 AT3G25440 123 / 5e-33 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10040896 [exp] 175 / 9e-51 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10041459 [exp] 167 / 3e-47 AT2G28480 417 / 3e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10034313 [exp] 166 / 5e-47 AT2G28480 416 / 4e-145 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10022280 [exp] 137 / 3e-35 AT3G27550 486 / 1e-167 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10003667 [exp] 137 / 8e-35 AT3G27550 481 / 9e-165 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Lus10022091 [exp] 113 / 2e-26 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 111 / 5e-26 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G176900 [exp] 426 / 8e-147 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 184 / 3e-54 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 169 / 3e-48 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 145 / 8e-38 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G148901 [exp] 112 / 6e-28 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 115 / 2e-27 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 104 / 9e-24 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 100 / 1e-22 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 77 / 9e-15 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.006G163100 [exp] 48 / 8e-06 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10009566 pacid=23145736 polypeptide=Lus10009566 locus=Lus10009566.g ID=Lus10009566.BGIv1.0 annot-version=v1.0 ATGCAAGCTTCTTACTTGAGCAGCTTGGTCGATGTTGTGTGCAAGGCTTGTCTTGAGAGACCTCCTCCTGCCAATGGTGTTCAAGTATCGCGCTCATGGA TTCATTCCAGCGCGTCGTTGGATAGTGCAGAACAAGATGTAAAATCTTCACCTGTTGATGGAGCTGGAAATGGCAAAGTGAAGAGGAAGAAGCTGAAAGG GAAACGAGCAGTTGTGAGGTGGTTGAGGTACTTTAGATGGAAGAAGAAGAAAGAGTATGAGAGAATGACCAATGAGGAAAAGATTCTGTATAAGCTAACA AAGGCTCGAAGGAAGGAGGAGAGGCTGATCGCAGCAATGAGCAAGATCGAACCTTCAGAATTGTCGGAAACAACTCACGATCCGGAGATACTGACCCCAG AGGAGCATTTCTTCTTCCTCAAGATGGGGATCAAGTGCAAGAACTACGTCCCCGTTGGAAGGCGCGGGATATACCAAGGAGTGATTCTAAACATGCATTT GCACTGGAAGAAACACCAGACGCTCAAAGTTGTGGTGAAGACTTTTCCACCGGAGGAAGTCAAGGAGCTCGCTGCTGAGCTGGCGCGATTATCGGGAGGA ATCGTGCTGGACATTCACGACGGGAATGAGATCATCATGTACAGAGGGAAGAACTATGTTCAGCCACCTACTGAGATCATGTCGCCGAGAGTCACTCTCA CCCGAAAGAAGGCACTTGATAAATCGAAGTACAAGGACGCCCTCCGTGCCATACGAAGGCACATCCCGAGGCTCGAGCAGGAGCTCGATCTGCTTCGTAT TCGTTCTTCCAAGTTCACGCCTCGAATTCAGGCCAATGATGCTACCAATGACGAAACTGACGATGAAGAAGCACAACTTCGAAGCATTTCAAGCTCGTCA TTAGAAGCTTCCCCGAAGCTGAAACAGCTCTTGGAAGAAACGCAGGGGACCTCCGAGGAGGAAGATTCCGGTACAGATGATGACGCAATGGTATCGGATT CAGAAGACCTGTCGGATATCTTCGAGACCGATTCAGATTCAGAGGAGACGGACGAACGTCCTCTATACCTGGACCAGTTCGAGAAGTTCCCCGTTCGAGA CGACGGAGAACCTGAAGATTTCGAAGAGTATCTGAAGAAAGTATCTGGAGGAGATTCCTCCAAAGGTGGCCGGAAAGATTCAGTGGAGTCATCGTCGTCG TCACCTAGCCTCGACGAAGTTGACCGTATGTTCATACGTGCAGCTTCTCTGTTGAGGAACAACCAAAGGCGTAACAAATAA
AA sequence Show only first row Show all	>Lus10009566 pacid=23145736 polypeptide=Lus10009566 locus=Lus10009566.g ID=Lus10009566.BGIv1.0 annot-version=v1.0 MQASYLSSLVDVVCKACLERPPPANGVQVSRSWIHSSASLDSAEQDVKSSPVDGAGNGKVKRKKLKGKRAVVRWLRYFRWKKKKEYERMTNEEKILYKLT KARRKEERLIAAMSKIEPSELSETTHDPEILTPEEHFFFLKMGIKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFPPEEVKELAAELARLSGG IVLDIHDGNEIIMYRGKNYVQPPTEIMSPRVTLTRKKALDKSKYKDALRAIRRHIPRLEQELDLLRIRSSKFTPRIQANDATNDETDDEEAQLRSISSSS LEASPKLKQLLEETQGTSEEEDSGTDDDAMVSDSEDLSDIFETDSDSEETDERPLYLDQFEKFPVRDDGEPEDFEEYLKKVSGGDSSKGGRKDSVESSSS SPSLDEVDRMFIRAASLLRNNQRRNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	0	1
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10000017 [exp]	1.0	0.7882
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	2.4	0.7031
AT2G30460			Nucleotide/sugar transporter f...		Lus10008596 [exp]	7.3	0.5702
AT5G55150			Protein of unknown function (D...		Lus10008665 [exp]	7.9	0.5145
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	13.0	0.5867
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	13.5	0.6256
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	21.9	0.5809
AT5G61000		ATRPA70D	Replication factor-A protein 1...		Lus10003025 [exp]	28.0	0.6233
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	38.2	0.5882
					Lus10022857 [exp]	47.2	0.5415

Compare expression of checked genes

Lus10009566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.