Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26660 60 / 8e-13 AS2 LBD24 LOB domain-containing protein 24 (.1) AT3G26620 60 / 8e-13 AS2 LBD23 LOB domain-containing protein 23 (.1) AT5G66870 45 / 1e-06 AS2 LBD36, ASL1 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) AT2G30130 44 / 2e-06 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT2G23660 44 / 3e-06 AS2 LBD10 LOB domain-containing protein 10 (.1.2) AT3G11090 43 / 5e-06 AS2 LBD21 LOB domain-containing protein 21 (.1) AT4G00210 43 / 5e-06 AS2 LBD31 LOB domain-containing protein 31 (.1) AT1G31320 43 / 5e-06 AS2 LBD4 LOB domain-containing protein 4 (.1) AT3G27650 43 / 5e-06 AS2 LBD25 LOB domain-containing protein 25 (.1) AT4G22700 42 / 1e-05 AS2 LBD32 LOB domain-containing protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011906 [exp] 54 / 4e-10 AT5G63090 59 / 4e-11 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10023591 [exp] 50 / 2e-08 AT3G26660 52 / 5e-09 LOB domain-containing protein 24 (.1) Lus10040313 [exp] 48 / 7e-08 AT5G66870 133 / 5e-40 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10023434 [exp] 46 / 3e-07 AT3G26660 131 / 5e-40 LOB domain-containing protein 24 (.1) Lus10025840 [exp] 45 / 1e-06 AT5G66870 184 / 4e-57 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10006679 [exp] 45 / 2e-06 AT5G66870 169 / 1e-50 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10009337 [exp] 45 / 2e-06 AT2G23660 183 / 7e-56 LOB domain-containing protein 10 (.1.2) Lus10000707 [exp] 45 / 2e-06 AT2G42430 222 / 2e-72 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10019633 [exp] 45 / 2e-06 AT5G66870 181 / 7e-55 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G097800 [exp] 47 / 2e-07 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1) Potri.007G066700 [exp] 45 / 6e-07 AT1G31320 216 / 3e-73 LOB domain-containing protein 4 (.1) Potri.003G149000 [exp] 44 / 2e-06 AT1G31320 241 / 2e-82 LOB domain-containing protein 4 (.1) Potri.001G081400 [exp] 44 / 3e-06 AT1G31320 228 / 3e-77 LOB domain-containing protein 4 (.1) Potri.015G135900 [exp] 44 / 3e-06 AT3G26660 165 / 2e-53 LOB domain-containing protein 24 (.1) Potri.008G072800 [exp] 43 / 4e-06 AT2G30130 229 / 8e-78 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.010G184400 [exp] 43 / 5e-06 AT2G30130 227 / 7e-77 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) Potri.001G345700 [exp] 43 / 6e-06 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.007G039500 [exp] 43 / 1e-05 AT5G66870 256 / 1e-84 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Potri.013G156200 [exp] 42 / 1e-05 AT2G40470 207 / 2e-67 ASYMMETRIC LEAVES2-LIKE 11, LOB domain-containing protein 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10009567 pacid=23145695 polypeptide=Lus10009567 locus=Lus10009567.g ID=Lus10009567.BGIv1.0 annot-version=v1.0 ATGGGAGATCGTTGTGCCCGCTGTACCTATAGTCGCCGCGCGTGTCCTGCCGATTGCCGCTTCATGCCCTACTTCCCGCCCAACTCTGAAGACTTCCAGC TGATTGTCCAAGTCTACAAGAGTCAGACGTCCGGTTTCTTGGATCGCAGCCTGGCCGACTTACCCGGGCCAGGAAGACAATACGATCGCGAGTGCTTTGA CGGAATAATGCATGTGGTCAGAGCTCACTTGCGCAATCCAGTCGGTGGAGCTAGGGCTGAACTGGCTGCGGCACAGTTTCAGCTAGAGTTTCAGTACGGC CACCCTCCCCCTCCACAGAACTAA
AA sequence Show only first row Show all	>Lus10009567 pacid=23145695 polypeptide=Lus10009567 locus=Lus10009567.g ID=Lus10009567.BGIv1.0 annot-version=v1.0 MGDRCARCTYSRRACPADCRFMPYFPPNSEDFQLIVQVYKSQTSGFLDRSLADLPGPGRQYDRECFDGIMHVVRAHLRNPVGGARAELAAAQFQLEFQYG HPPPPQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	0	1
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	1.0	0.9697
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	5.5	0.9676
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	5.6	0.9283
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10025707 [exp]	6.0	0.9465
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	7.7	0.9615
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	8.4	0.9522
AT3G52610			unknown protein		Lus10014215 [exp]	8.7	0.9609
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	9.5	0.9535
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	9.7	0.9592
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10035955 [exp]	10.4	0.9336

Compare expression of checked genes

Lus10009567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.