Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07480 213 / 7e-72 2Fe-2S ferredoxin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009565 [exp] 295 / 6e-104 AT3G07480 236 / 6e-81 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10020390 [exp] 278 / 2e-97 AT3G07480 238 / 2e-81 2Fe-2S ferredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G239000 [exp] 233 / 1e-79 AT3G07480 236 / 5e-81 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.014G177100 [exp] 226 / 3e-77 AT3G07480 239 / 2e-82 2Fe-2S ferredoxin-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009568 pacid=23145707 polypeptide=Lus10009568 locus=Lus10009568.g ID=Lus10009568.BGIv1.0 annot-version=v1.0 ATGGCGACCTCGAGGCTCTATCGACTCTCCTCGCAAATCCACCGTCTCTCTGCTTCATCATCTCCCTTAACCAAATCCATCATCACCCGCTCCTCCGCCA CCGCCGCGGCTGAAGTAGCTTCCCGAGCAGGCACCGCCAAGGTCTCCGACAGGATCGTGAAGCTCTTTGCGATCGACCCGGAAGGACACAAGCGAGAGAT CATCGGGCTCACGGGGCAGACTCTACTCAAGGCACTGACCAACCACGGGCTAATCGACCCTGCGTCCCACCGGTTGGAGGACATCGACGCCTGCTCCGCA GAGTGCGAGGTCAGCATCGCGCAGGAGTGGCTCCAGAGGCTTCCCGCCAGATCCTACGACGAGGAGTACGTGCTGAAGCGGAACTCCAGGGTTAGGGTGC TGAACCAGCACTCCAGGTTGGGGTGCCAAGTTGTGATCACTTCTCAGCTCCAAGGTATGGTTGTTGCTGTTCCTGAGCCTAGACCGTGGGACACTCCGTA A
AA sequence Show only first row Show all	>Lus10009568 pacid=23145707 polypeptide=Lus10009568 locus=Lus10009568.g ID=Lus10009568.BGIv1.0 annot-version=v1.0 MATSRLYRLSSQIHRLSASSSPLTKSIITRSSATAAAEVASRAGTAKVSDRIVKLFAIDPEGHKREIIGLTGQTLLKALTNHGLIDPASHRLEDIDACSA ECEVSIAQEWLQRLPARSYDEEYVLKRNSRVRVLNQHSRLGCQVVITSQLQGMVVAVPEPRPWDTP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	0	1
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	1.0	0.8668
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10024413 [exp]	1.4	0.8468
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10035469 [exp]	4.9	0.7713
AT5G08060			unknown protein		Lus10034681 [exp]	5.5	0.8260
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	9.6	0.8182
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10021434 [exp]	10.7	0.7216
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10018762 [exp]	11.8	0.7634
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	12.2	0.7808
					Lus10024103 [exp]	13.7	0.7772
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	15.9	0.7688

Compare expression of checked genes

Lus10009568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.