Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25440 114 / 1e-29 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G13070 44 / 4e-05 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009566 [exp] 237 / 7e-77 AT3G25440 431 / 4e-149 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10020391 [exp] 231 / 1e-74 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10040896 [exp] 51 / 2e-07 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G176900 [exp] 132 / 3e-36 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 46 / 6e-06 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 42 / 0.0002 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009569 pacid=23145709 polypeptide=Lus10009569 locus=Lus10009569.g ID=Lus10009569.BGIv1.0 annot-version=v1.0 ATGCAAGCTTCTTACTTGAGCAGCTTGGTCGATGTTGTGTGCAAGGCTTGTCTTGAGAGACCTCCTCCTGCCAATGGTGTTCAAGTATCGCGCTCATGGA TTCATTCCAGCGCGTCGTTGGATAGTGCAGAACAAGATGTAAAATCTTCACCTGTTGATGGAGCTGGAAATGGCAAAGTGAAGAGGAAGAAGCTGAAAGG GAAACGAGCAGTTGTGAGGTGGTTGAGGTACTTTAGATGGAAGAAGAAGAAAGAGTATGAGAGAATGACCAATGAGGAAAAGATTCTGTATAAGCTAACA AAGGCTCGTAGGAAGGAGGAGAGGCTGATTTCAGCGATGAGCAAGATTGAACCTTCAGAATCGTCGGAAACAACTCATGATCCGGAGATACCGACTCCAG AGGAGCATGTCTTCTTCCACACAAGAGAACTCTGCGATCGTGAAGTTGGGGAGATTGGAGACGATCGACGGAAGGAACGTTCGTGGCCGAACGATTTGAT TGAAAGGTTGTCCGCAGTGACGGCGACAACTGCAGAGGAGATGGGTTGCAGTGACAACGACGACAGCCGCGGAAGTGGGGCAGGGTGGTGCGTTCCACAA GCCGCCCGCCGAGGAAAGTGA
AA sequence Show only first row Show all	>Lus10009569 pacid=23145709 polypeptide=Lus10009569 locus=Lus10009569.g ID=Lus10009569.BGIv1.0 annot-version=v1.0 MQASYLSSLVDVVCKACLERPPPANGVQVSRSWIHSSASLDSAEQDVKSSPVDGAGNGKVKRKKLKGKRAVVRWLRYFRWKKKKEYERMTNEEKILYKLT KARRKEERLISAMSKIEPSESSETTHDPEIPTPEEHVFFHTRELCDREVGEIGDDRRKERSWPNDLIERLSAVTATTAEEMGCSDNDDSRGSGAGWCVPQ AARRGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009569 [exp]	0	1
AT3G51560			Disease resistance protein (TI...		Lus10009109 [exp]	3.2	0.7459
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10020239 [exp]	26.8	0.6521
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042204 [exp]	104.5	0.6307
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10004024 [exp]	119.8	0.6549
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10034392 [exp]	120.1	0.6541

Compare expression of checked genes

Lus10009569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.